Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g1710 ATGATGCCCATTTTGGACCACCACCATGATCATAATAATCAACCCCTCCTCCTCCCCGCCGATGATCTCGCCGCCGCTGTCCCCGCCCCCGCCTTCCATCGCAAGAAACGGATGCCCAGAAACCGCCGCCGCTCTTCTTCTAATCTTCCCTTCTTTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAAATAACACTCCCCATCTCCCTCCTCCCCGGGTAATTGATCCAAGGAACCTGAAGTTTCTTTTCCAGAAGGAGCTTAAGAACAGTGATGTTAGCTCTCTGAGGAGAATGATACTCCCGAAGAAAGCAGCTGAAACTCACCTTCCAGCTTTGGAGTCTAAAGAAGGAATTATAATCACCATGGATGACTTGGATGGGGTGCATGTTTGGAACTTCAAATATAGGTTTTGGCCAAATAACAATAGTAGAATGTATGTACTTGAAAATACTGGAGACTTTGTGAATGCCCATGGCTTACATCTAGGAGATTTCATCATGGTTTACCAAGATTGTGAAGAACATAACTATGTGATTCAAGCAAAAAAGGCTTGCGAGCAAGAAATATATTCCGACATAGCAACCAACGTCGTGATCAACGACGACATTGTGTTTCAAGACTACGATGCTAGCAAAGCGGCCAGCTCCATATACGTGCCTAGTCCAACCATGGAAGATCCTGTGTCATCATTCATCTATGACACTAGTTCTGCCTTCGACAACGATTCGCCTTTCGACTTTATGAGTGGATCAATGACCAACTACTCAAGAATGGGAGGCCTCGAAGGCTTTGGATCGGTCGAGAACTTGTCTCTCGACGACTTCTACTAA 834 45.44 MMPILDHHHDHNNQPLLLPADDLAAAVPAPAFHRKKRMPRNRRRSSSNLPFFPSSSSSSSSSSNNTPHLPPPRVIDPRNLKFLFQKELKNSDVSSLRRMILPKKAAETHLPALESKEGIIITMDDLDGVHVWNFKYRFWPNNNSRMYVLENTGDFVNAHGLHLGDFIMVYQDCEEHNYVIQAKKACEQEIYSDIATNVVINDDIVFQDYDASKAASSIYVPSPTMEDPVSSFIYDTSSAFDNDSPFDFMSGSMTNYSRMGGLEGFGSVENLSLDDFY 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 35244575 35247816 + CrPI670011_09g017100.1 Cre09g1710 508378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g1710 277 CDD B3_DNA 82 184 IPR003340 GO:0003677(InterPro)
Cre09g1710 277 ProSiteProfiles B3 DNA-binding domain profile. 84 186 IPR003340 GO:0003677(InterPro)
Cre09g1710 277 FunFam B3 domain-containing transcription factor FUS3 80 194 - -
Cre09g1710 277 Gene3D - 80 197 IPR015300 -
Cre09g1710 277 SMART B3_2 84 186 IPR003340 GO:0003677(InterPro)
Cre09g1710 277 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 36 185 IPR044800 GO:0003700(InterPro)
Cre09g1710 277 MobiDBLite consensus disorder prediction 31 74 - -
Cre09g1710 277 Pfam B3 DNA binding domain 84 181 IPR003340 GO:0003677(InterPro)
Cre09g1710 277 SUPERFAMILY DNA-binding pseudobarrel domain 82 185 IPR015300 -
Cre09g1710 277 MobiDBLite consensus disorder prediction 44 69 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre09g0880 Cre-Chr9:8795250 Cre09g1710 Cre-Chr9:35244575 2.70E-33 dispersed
Cre09g1710 Cre-Chr9:35244575 Cre10g2376 Cre-Chr10:37834668 1.30E-15 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54390 PF02362 B3 2.00E-17 CL0405 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g1710 K09287 - csv:101222512 410.994