Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g1714 ATGTCTGGTTCTGATGGCGTCAACAACAACAATGGCGCCATAATCGACCATTCTCAACAACAGAGACATCATCAACAACAACAGCAGCAGCAACTACAGGGGAATCAGTCTAACAACAATGGTGCTTTGGCCGTCAAAAAACCCCCCTCCAAGGACCGCCACAGCAAGGTCGACGGCCGTGGCCGCCGTATTCGTATGCCCATCGTTTGCGCCGCTCGCGTTTTCCAACTCACCCGCGAATTAGGCCACAAATCCGACGGCCAGACTATCGAATGGCTCCTTCGTCAAGCAGAGCCGTCGATTATCGCCGCCACTGGCACCGGCACCACTCCGGCTAGCTTCTCCACCATCTCCGCCTCACTCCGAGGCGCTCCTGCTGCTGCTTCCTCTTCTTCTTCCTCGCTCGACCATAAACCCCTTTTGGCTCCGGCGCCCTTCATTTTAGGCAAACGCGTCAGAACCGACGACGATGGAGCTAATAAAGACGACGGCGGTGGTATTTCGGTCGGTCCCACTATTGGTTCGATTATGGGTCCGGCTGCAGCAGGTGGGTACTGGGCAATTCCCGCGAGGTCGGATTTCGGACAGGTGTGGAGCTTTGCAGCGGCGGCGCCGGAGATGGTGATTCAACCGACAGCCGTTTCCCACCAGGCGTCGCTGTTCGTTCAGCAGCAATCGATGGGAGAGGCGTCGGCGGCGAAAGTGGGAAACTACCTTCCGGGGCATCTGAATTTGCTTGCTTCCTTATCAGGTGGACCGGGAAGTTCCGTCCGAAGAGACAACGACCACCGTTAA 795 56.86 MSGSDGVNNNNGAIIDHSQQQRHHQQQQQQQLQGNQSNNNGALAVKKPPSKDRHSKVDGRGRRIRMPIVCAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTISASLRGAPAAASSSSSSLDHKPLLAPAPFILGKRVRTDDDGANKDDGGGISVGPTIGSIMGPAAAGGYWAIPARSDFGQVWSFAAAAPEMVIQPTAVSHQASLFVQQQSMGEASAAKVGNYLPGHLNLLASLSGGPGSSVRRDNDHR 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 35311297 35312091 - CrPI670011_09g017140.1 Cre09g1714 508382

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g1714 264 MobiDBLite consensus disorder prediction 47 62 - -
Cre09g1714 264 Pfam TCP family transcription factor 50 131 IPR017887 -
Cre09g1714 264 ProSiteProfiles TCP domain profile. 50 104 IPR017887 -
Cre09g1714 264 MobiDBLite consensus disorder prediction 1 44 - -
Cre09g1714 264 MobiDBLite consensus disorder prediction 1 62 - -
Cre09g1714 264 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 20 161 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g1714 K16221 - - csv:101214586 389.808
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1732 Cre-Chr2:30553321 Cre09g1714 Cre-Chr9:35311297 2.90E-78 dispersed
Cre05g2607 Cre-Chr5:37152907 Cre09g1714 Cre-Chr9:35311297 2.90E-28 dispersed
Cre06g0965 Cre-Chr6:3121043 Cre09g1714 Cre-Chr9:35311297 7.50E-27 dispersed
Cre09g1714 Cre-Chr9:35311297 Cre11g1770 Cre-Chr11:29315693 3.70E-28 dispersed
Cre09g1714 Cre-Chr9:35311297 Cre06g2493 Cre-Chr6:32663957 2.20E-28 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre09g1714 . 48 264 TCP Transcription Factor Family AT5G23280 63.4 4.6e-68 255.0
Cre02g1732 . 37 257 TCP Transcription Factor Family AT5G23280 60.3 2.1e-60 229.6
Cre06g0793 . 59 341 TCP Transcription Factor Family AT2G45680 54.5 4.2e-67 252.3
Cre05g2607 . 63 157 TCP Transcription Factor Family AT3G47620 89.7 9.3e-41 165.2
Cre01g1570 . 40 140 TCP Transcription Factor Family AT3G47620 82.2 1.8e-39 161.0
Cre11g1770 . 149 231 TCP Transcription Factor Family AT3G47620 90.4 1.4e-36 151.4
Cre11g1770 . 149 241 TCP Transcription Factor Family AT1G69690 82.8 1.6e-36 150.6
Cre05g1545 . 49 312 TCP Transcription Factor Family AT3G27010 57.0 3.4e-60 229.2
Cre02g1732 . 9 255 TCP Transcription Factor Family AT5G08330 56.3 1.5e-63 240.0
Cre09g1714 . 44 263 TCP Transcription Factor Family AT5G08330 62.2 9.4e-63 237.3
Cre07g1995 . 43 168 TCP Transcription Factor Family AT3G02150 62.1 1.4e-38 157.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001822 4 2 1 2 2 2 4 2 2 1 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 3 2 1 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54392 PF03634 TCP 7.90E-32 No_clan Cre TF