Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g1714 ATGTCTGGTTCTGATGGCGTCAACAACAACAATGGCGCCATAATCGACCATTCTCAACAACAGAGACATCATCAACAACAACAGCAGCAGCAACTACAGGGGAATCAGTCTAACAACAATGGTGCTTTGGCCGTCAAAAAACCCCCCTCCAAGGACCGCCACAGCAAGGTCGACGGCCGTGGCCGCCGTATTCGTATGCCCATCGTTTGCGCCGCTCGCGTTTTCCAACTCACCCGCGAATTAGGCCACAAATCCGACGGCCAGACTATCGAATGGCTCCTTCGTCAAGCAGAGCCGTCGATTATCGCCGCCACTGGCACCGGCACCACTCCGGCTAGCTTCTCCACCATCTCCGCCTCACTCCGAGGCGCTCCTGCTGCTGCTTCCTCTTCTTCTTCCTCGCTCGACCATAAACCCCTTTTGGCTCCGGCGCCCTTCATTTTAGGCAAACGCGTCAGAACCGACGACGATGGAGCTAATAAAGACGACGGCGGTGGTATTTCGGTCGGTCCCACTATTGGTTCGATTATGGGTCCGGCTGCAGCAGGTGGGTACTGGGCAATTCCCGCGAGGTCGGATTTCGGACAGGTGTGGAGCTTTGCAGCGGCGGCGCCGGAGATGGTGATTCAACCGACAGCCGTTTCCCACCAGGCGTCGCTGTTCGTTCAGCAGCAATCGATGGGAGAGGCGTCGGCGGCGAAAGTGGGAAACTACCTTCCGGGGCATCTGAATTTGCTTGCTTCCTTATCAGGTGGACCGGGAAGTTCCGTCCGAAGAGACAACGACCACCGTTAA 795 56.86 MSGSDGVNNNNGAIIDHSQQQRHHQQQQQQQLQGNQSNNNGALAVKKPPSKDRHSKVDGRGRRIRMPIVCAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTISASLRGAPAAASSSSSSLDHKPLLAPAPFILGKRVRTDDDGANKDDGGGISVGPTIGSIMGPAAAGGYWAIPARSDFGQVWSFAAAAPEMVIQPTAVSHQASLFVQQQSMGEASAAKVGNYLPGHLNLLASLSGGPGSSVRRDNDHR 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 35311297 35312091 - CrPI670011_09g017140.1 Cre09g1714 508382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g1714 264 MobiDBLite consensus disorder prediction 47 62 - -
Cre09g1714 264 Pfam TCP family transcription factor 50 131 IPR017887 -
Cre09g1714 264 ProSiteProfiles TCP domain profile. 50 104 IPR017887 -
Cre09g1714 264 MobiDBLite consensus disorder prediction 1 44 - -
Cre09g1714 264 MobiDBLite consensus disorder prediction 1 62 - -
Cre09g1714 264 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 20 161 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g1732 Cre-Chr2:30553321 Cre09g1714 Cre-Chr9:35311297 2.90E-78 dispersed
Cre05g2607 Cre-Chr5:37152907 Cre09g1714 Cre-Chr9:35311297 2.90E-28 dispersed
Cre06g0965 Cre-Chr6:3121043 Cre09g1714 Cre-Chr9:35311297 7.50E-27 dispersed
Cre09g1714 Cre-Chr9:35311297 Cre11g1770 Cre-Chr11:29315693 3.70E-28 dispersed
Cre09g1714 Cre-Chr9:35311297 Cre06g2493 Cre-Chr6:32663957 2.20E-28 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54392 PF03634 TCP 7.90E-32 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g1714 K16221 - csv:101214586 389.808