Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g1717 ATGTCTAAGTCTACCCACAGTTTCTCCCCAAACCCTCCTCTACTTTTACGATCTTCTCCTTCACACCGCTACTTCTCTCAAACCTTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGATTCAGGTTCCTCTCTCCTTCCTCCTTTCATGGCGCGAGGTAGAAAGCGGCGCCGACCGGAGACTGTTGCGGAGGGTCGGGAAACTGAAGGGAACCTCGACAATACTGAAACCAAGCCCCGGGTTGGCCATGGAGGGACTGAAGTTGGAGTAATTGACAAGGGTTTTTTGGGCGACGGCGAAAACGAGGTGCAATGGGGGGCGAGGACAGAAGAGGGGGATGGAGGATTGGTTTCGGAAAGTAAACACGGCGAAACCCTGCTGCGGAATGAAGGGGAGGACAATGGTGAAGAGCAGAAGGGTTCTGTTGCTGGGAAAAACGGCGAATTAGAATGTGAGGTTTCTATCAGAAGTCCGACGAGGAGTTTGAGAAAGAAGGCGAGAGTTTCGTACAACGAGGAGGTTTACGAGTTTGATGAGGATGATGATGAAGAGGAGATTCCTTTCAAGAAGCCTGGGCGAAGGGGTAGGAAAAAGAAAGTATTGTCTTCGAATCGGAATGTACCTAACGTGGAAGAAAAACGGAGTCCTGCGAATGAAGAAGATGATGTTAGGGAGAAACAATCTGGTGTTTCTGGAAATAGGAGAGGTTCTTATAGAAGGAAACGTGGTGGAAGATATGCGCTAAGAAAGCAAAGTGTTGTTAAGCCGGAGGGCGAGAAGAAAATTAATAAGTTTGATCCTGAATTCATCGCGGAGATATCTTTAATGTGCCATCAGTGCCAGAGGAATGATAAAGGCCGTGTAGTACGTTGTACTAATTGTAGGAGGAAGCGATATTGTATCCCCTGTTTGCAGAATTGGTACCCTCATACATCAGAAGAGGCAATTGCCGAATCTTGCCCGGTTTGCTCTGGGAATTGCAATTGTAAAGCATGTTTGCGTTTAGATGTTCCTGTTAAAAATTTGAAGAACATGGCACCAGTAGTCACAGAAGACAGCAAGGTTGAGCATGCAAAATATGTACTACGGAAACTTCTACCATTTCTAAAATGGCTAAATGAAGAACAGATGTTGGAGAAAAAACAAGAGGCTACAAGGCTAGGTTTGCCTCTTCATGATCTAAAGGTGGAGAAGGTAGATTGTGAAGACAATGAGCGAATGTACTGTGACATCTGTAGAACATCAATTTTTGATTTTCATCGAACGTGCGTTTCTTGTTCTTTTGACCTTTGTATCAACTGTTGCCGGGAAATCCGTGCAGGAGATATGCAGTGTTGTGAGAAAAAAAAGATAATACCATATATTAATCGAGGGTTTGAGTACTTGCATGGTGAAGGGCCGAAAAAAGTAAAAAGAGAAAAAGCCAAAGCGCTTGCTGAGTCTTGTCCTAGAGATGACGAGGAATTAGCATTCATATGGAGAGCAGAAAAAGATGGAAGGATTCCTTGTCCACCATCCAACTTGGGTGGTTGTGGTAATGGTTTTCTAGAGTTAAGATGTATATTGGAAGATTCAATCTCTAAATTGGTGGATGAGGGTGAGGAAATTGCTAGAACCCACAAGATAATGGATGTGGATGAAACTGCAGGAAAGTGGTGCTCATGCTTTAACTCGGCTGGTGAAATTAATCTTGAGAGTGGTATGTTGAAGAAAGCTGCTTCCAGACAAGGTTCAAGTGATAATTATTTATATTGTCCTAGGGGCAGGGATATTCAACCTGGCCAGATAAAGCATTTTCAGTGGCATTGGAGCAAAGGTGAGCCGGTGGTTGTTAGCAATGTTCTTGAAACTACATCAGGTTTGAGCTGGGAACCCCTTGTCATGTGGCGTGCCTTCCGTCAAATTACGCATACAAAACATGGTCAACAGTTGGAAGTTAAGGCCATTGATTGCTTAGATTGGTGTGAGCTTGATGTCAATATCCATAAATTCTTTACCGGTTATACAGATGGTCAGTTTGATGCAAAATTGTGGCCTCGGATACTTAAACTCAAGGACTGGCCTCCATCTAATCATTTTGAGAAATGCCTGCCCCGTCATAATGCTGAATTTATCAGTTGCTTACCTTTTAAGGAATATACACATCCTTCTAAAGGCAACCTAAATCTTGCTGTTAAATTGCCGGAAAAATCTCTAAAACCTGATATGGGACCTAAGACATATATTGCTTATGGAGTTGCACAGGAGCTTGGTCGTGGGGATTCTGTTACCAAGCTTCACTGTGATATGTCTGATGCAGTAAATGTTCTTACTCATGCTACCAATGTCACACTTGAGCCCGAGCATTTACGTAGTATTAAAGAATTAAAAGCAAAACATCTTGCACACGACCAGGAAGAAATTTATGGTGCTATGACCGATACTAATATTGTCGATGGAAGCAAGTTTTGCAATGACCCCTGTAGCATGACTGAAAATGGAAAGGAGCATGTTTGTGAAGTTGGTCATCAAAACAATAATGAGGTCTTGGAGGATGCATCTAACCCTAAGAGAGGTGATGAGGAAGAGGGCGATCTTCGAAATTTGAATGAACACAATGGAACTGAGCCTGATGAGTCTGTAAAGGTGAATCTAGCCGAAGAAACTTGTAGTGAAGCGAAAATATCAGAACAAATGGAAAGTTTGGAGGCGTCTGATGGTGGTGCACTGTGGGACATTTTTCGTAGGCAAGACGTCCCCCTACTGCAGCAATATCTCAACAAGCATTTCAGAGAATTTAGGCACATTCATGCCGGTCCTGTTCCACAGGTGTTTCATCCCGTGCATGATCAGTCATTTTATTTGACTTTGGAACACAAAAGAAAGCTCAAGGAGGAATATGGAATTGAACCTTGGACATTTGTCCAAAATCTGGGAGATGCTGTCTTTATTCCTGCTGGGTGTCCTCATCAAGTCAGAAACTTAAAGTCATGCATAAAGGTTGCTCTGGACTTTGTGTCACCTGAGAATGTTGGAGAGTGCATCCACTTGACTGAAGAATTTCGTAGGCTTCCTTCAAATCATTGGGCTAAGGAGGACAAGTTGGAGATCAAGAAAATGAGTGTTTATGCTATGAAAGCGACAATTGCTTCCTCAGGGGGTGATCCTGTGACCAGAAGAGACTGCACAAGAGCAAATCGGACTCGAGCGTCAGGAGCCAAGATCAAAGCTGCAGGATTCTTCAGGCTTTATGCTCCACAAATTCTTGTTTCTCCCTCTCGCTCCTCATTCCTTCCTTTCACTTCTTCTTTTCGTTCCTCATTAGAGACAACTGCCATCACACCACCCTATCCTCCGTTGTCCACACCTTCTACAAGACTCGTAGCTTCTTGCCATCCAAGCCTCTCCGACGCCCTCTTTGTCTCCCACATACTCTACGACGCTAACTAA 3429 43.66 MSKSTHSFSPNPPLLLRSSPSHRYFSQTFSSSSSSSSSSDSGSSLLPPFMARGRKRRRPETVAEGRETEGNLDNTETKPRVGHGGTEVGVIDKGFLGDGENEVQWGARTEEGDGGLVSESKHGETLLRNEGEDNGEEQKGSVAGKNGELECEVSIRSPTRSLRKKARVSYNEEVYEFDEDDDEEEIPFKKPGRRGRKKKVLSSNRNVPNVEEKRSPANEEDDVREKQSGVSGNRRGSYRRKRGGRYALRKQSVVKPEGEKKINKFDPEFIAEISLMCHQCQRNDKGRVVRCTNCRRKRYCIPCLQNWYPHTSEEAIAESCPVCSGNCNCKACLRLDVPVKNLKNMAPVVTEDSKVEHAKYVLRKLLPFLKWLNEEQMLEKKQEATRLGLPLHDLKVEKVDCEDNERMYCDICRTSIFDFHRTCVSCSFDLCINCCREIRAGDMQCCEKKKIIPYINRGFEYLHGEGPKKVKREKAKALAESCPRDDEELAFIWRAEKDGRIPCPPSNLGGCGNGFLELRCILEDSISKLVDEGEEIARTHKIMDVDETAGKWCSCFNSAGEINLESGMLKKAASRQGSSDNYLYCPRGRDIQPGQIKHFQWHWSKGEPVVVSNVLETTSGLSWEPLVMWRAFRQITHTKHGQQLEVKAIDCLDWCELDVNIHKFFTGYTDGQFDAKLWPRILKLKDWPPSNHFEKCLPRHNAEFISCLPFKEYTHPSKGNLNLAVKLPEKSLKPDMGPKTYIAYGVAQELGRGDSVTKLHCDMSDAVNVLTHATNVTLEPEHLRSIKELKAKHLAHDQEEIYGAMTDTNIVDGSKFCNDPCSMTENGKEHVCEVGHQNNNEVLEDASNPKRGDEEEGDLRNLNEHNGTEPDESVKVNLAEETCSEAKISEQMESLEASDGGALWDIFRRQDVPLLQQYLNKHFREFRHIHAGPVPQVFHPVHDQSFYLTLEHKRKLKEEYGIEPWTFVQNLGDAVFIPAGCPHQVRNLKSCIKVALDFVSPENVGECIHLTEEFRRLPSNHWAKEDKLEIKKMSVYAMKATIASSGGDPVTRRDCTRANRTRASGAKIKAAGFFRLYAPQILVSPSRSSFLPFTSSFRSSLETTAITPPYPPLSTPSTRLVASCHPSLSDALFVSHILYDAN 1142
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 35361271 35373769 - CrPI670011_09g017170.1 Cre09g1717 508385

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g1717 1142 CDD cupin_RmlC-like 928 999 - -
Cre09g1717 1142 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 126 1043 IPR045109 GO:0000118(PANTHER)|GO:0000785(PANTHER)|GO:0003712(PANTHER)|GO:0006357(PANTHER)|GO:0031490(PANTHER)|GO:0032454(PANTHER)|GO:0032454(InterPro)
Cre09g1717 1142 MobiDBLite consensus disorder prediction 114 139 - -
Cre09g1717 1142 ProSiteProfiles Zinc finger RING-type profile. 277 324 IPR001841 -
Cre09g1717 1142 MobiDBLite consensus disorder prediction 838 875 - -
Cre09g1717 1142 SUPERFAMILY Clavaminate synthase-like 596 1033 - -
Cre09g1717 1142 MobiDBLite consensus disorder prediction 53 76 - -
Cre09g1717 1142 ProSiteProfiles JmjC domain profile. 716 1015 IPR003347 -
Cre09g1717 1142 MobiDBLite consensus disorder prediction 846 875 - -
Cre09g1717 1142 Gene3D Cupin 586 1023 - -
Cre09g1717 1142 MobiDBLite consensus disorder prediction 1 150 - -
Cre09g1717 1142 MobiDBLite consensus disorder prediction 1 45 - -
Cre09g1717 1142 SMART cupin_9 697 1015 IPR003347 -
Cre09g1717 1142 Pfam JmjC domain, hydroxylase 901 998 IPR003347 -
Cre09g1717 1142 MobiDBLite consensus disorder prediction 212 229 - -
Cre09g1717 1142 MobiDBLite consensus disorder prediction 176 242 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g1717 K15601 - - csv:101221956 1741.47
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0152 Cre-Chr5:1608548 Cre09g1717 Cre-Chr9:35361271 1.70E-190 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g683 . . . . . . . . . . . . . . . . . . . . . . . . Cla01g00805 Cam01g0827 Cec01g0825 Cco01g0857 Clacu01g0820 Cmu01g0788 Cre09g1717 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005729 2 1 1 2 2 1 1 1 1 0 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 2 3 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54393 PF02373 JmjC 3.30E-13 CL0029 Cre TR