Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g1721 ATGCAGCAGATGGGGCAGCCCAGCCGCCCCTCCCCCCTAGCCGCCTACCTACTCGCCTGGCGTGCATCCGGTTCGGTCAACAATAAGAGATTCTGTCCTCCACAGGTCTCGTCCCGTCGTCGCAGAGAATCCGCCGCAGGTCCCGTCGCGTCATCGCAAAGGTTCCCTGCCGCCGCTGCGGCTGCAGTCGCCCGTGACCTATTTGTAAAGAGAGCAGCCAGTATGTTCTTCCACATAGTTTTAGAGAGGAATATGCAGCTACATCCACGGCACTTTGGCCGTAACCTCCGTGAGAACCTCGTCTCAAAACTTATGAAAGATGTTGAAGGCACTTGCAGTGGCCGACATGGTTTTGTTGTGGCAATTACGGGAATTGAGAATATTGGGAAAGGGTTGATCCGTGATGGAACAGGTTTTGTCACTTTTCCTGTTAAGTACCAATGTGTCGTGTTTAGACCATTCAAGGGAGAAATTTTAGAAGCCGTTGTTACTATGGTAAATAAGATGGGTTTCTTTGCTGAAGCTGGACCTGTTCAGATTTTTGTTTCAAACCATTTGATACCAGATGATATGGAGTTCCAGTCTGGAGATGTGCCAAACTATACCACCTCGGATGGATCAGTTAAGATTCAGAAAGACAGTGAAGTTCGATTAAAGATAATTGGGACTCGAGTAGATGCAACTGAAATTCTTGTAAACAAAGCTGTAATGGCGAGCCGATACTGGATGGTCTCTTTACCTGTTCAAGGCTCCGCTTCTTCCCTTTGGAATCGTCTCCAAGAACAAATCTCCAAGCACTCTTTCGATACTCCTCTTTACAGATTCAATATTCCTAATCTCCGTGTTGGAACGCTCGATTCGCTCCTTTCTCTCAGCGATGATCTTCTGAAGTCGAACAGCTTTGTGGAAGGAGTTTCTCAGAAGATCAGACGGCAGATCGAGGAACTGGAGAGGGTTTCAGGTGTGGAGAGCAATGTTTTGACGGTTGATGGAGTCCCCGTTGATTCGTATCTTACTAGGTTTGTGTGGGATGAAGCCAAGTACCCGACAATGTCGCCTCTGAGAGACATTGTGGATAGCATTCACAGTCAAGTGGCCAAGATTGAGGATGACCTCAAGATTCGTGTTGCTGAGTACAATAATGTGCGGAGTCAACTTAATGCCATTAACAGAAAGCAAAGTGGAAGCTTGGCAGTCCGTGATATTTCCAATCTTGTAAAACCAGAGGACATAATTACCTCAGAACATCTAGCAACCCTTCTAGTGATTGTTCCCAAGTACTCTCAGAAAGAGTGGCTATCTAGCTATGAAACACTGACTAACTATGTGGTTCCCAGGTCTTCGAAGAAGTTATACGAGGATAATGAATATGCCCTTTACACTGTAACACTCTTTAGTCGCGTTGCAGACAATTTCAAAACAAGTGCACGTGAAAAAGGGTTCCAGATTCGTGAATTTGAATATAGTCCAGAAGCACAAGAGAGTAGAAAACAGGAGTTAGAAAAGTTGGTGCAGGACCAGGAAAGTTTGAGAAGTTCTTTATTGCAGTGGTCCTACGCTAGTTATGCTGAGGTTTTCATTTCCTGGATGCACTTCTGTGCCGTACGTGTGTTTGCTGAGAGTATCCTGAGATATGGTTTACCACCATCCTTCTTGGCATCTGTTTTGGCACCATCTGTTAAAAGTGAGAAGAAAGTAAGATCAATCCTTGAAGGTTTGTGCGACAGTGCCAACAGTACATATTGGAAAACTGAAGATGAAGTGGGAGGAGGGATGGTTGGTCTTGGAGGAGATTCTGATGCATACCCATATGTCTCCTTCACAATCAATCTTGCTTAA 1839 45.46 MQQMGQPSRPSPLAAYLLAWRASGSVNNKRFCPPQVSSRRRRESAAGPVASSQRFPAAAAAAVARDLFVKRAASMFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEILVNKAVMASRYWMVSLPVQGSASSLWNRLQEQISKHSFDTPLYRFNIPNLRVGTLDSLLSLSDDLLKSNSFVEGVSQKIRRQIEELERVSGVESNVLTVDGVPVDSYLTRFVWDEAKYPTMSPLRDIVDSIHSQVAKIEDDLKIRVAEYNNVRSQLNAINRKQSGSLAVRDISNLVKPEDIITSEHLATLLVIVPKYSQKEWLSSYETLTNYVVPRSSKKLYEDNEYALYTVTLFSRVADNFKTSAREKGFQIREFEYSPEAQESRKQELEKLVQDQESLRSSLLQWSYASYAEVFISWMHFCAVRVFAESILRYGLPPSFLASVLAPSVKSEKKVRSILEGLCDSANSTYWKTEDEVGGGMVGLGGDSDAYPYVSFTINLA 612
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 35447480 35463619 - CrPI670011_09g017210.1 Cre09g1721 508389

Annotation


Select Seq ID Length Analysis Description Start End IPR GO
Cre09g1721 612 SUPERFAMILY Nucleic acid-binding proteins 152 234 IPR012340 -
Cre09g1721 612 SUPERFAMILY Vacuolar ATP synthase subunit C 237 611 IPR036132 GO:0015078(InterPro)|GO:0033180(InterPro)|GO:1902600(InterPro)
Cre09g1721 612 CDD S1_RNAPII_Rpb7 155 230 - -
Cre09g1721 612 FunFam DNA-directed RNA polymerase II subunit RPB7 75 154 - -
Cre09g1721 612 Pfam V-ATPase subunit C 241 605 IPR004907 GO:0033180(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cre09g1721 612 Gene3D - 155 241 IPR012340 -
Cre09g1721 612 Gene3D Vacuolar atp synthase subunit c; domain 1 242 570 - -
Cre09g1721 612 Pfam SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 82 138 IPR005576 GO:0006351(InterPro)
Cre09g1721 612 SUPERFAMILY N-terminal, heterodimerisation domain of RBP7 (RpoE) 75 152 IPR036898 -
Cre09g1721 612 CDD RNAP_II_Rpb7_N 76 155 - -
Cre09g1721 612 FunFam V-type proton ATPase subunit C 399 487 - -
Cre09g1721 612 CDD V-ATPase_C 241 609 IPR004907 GO:0033180(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cre09g1721 612 Gene3D - 277 548 - -
Cre09g1721 612 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 237 611 IPR004907 GO:0000221(PANTHER)|GO:0033180(InterPro)|GO:0046961(PANTHER)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cre09g1721 612 Gene3D - 399 487 - -
Cre09g1721 612 FunFam DNA-directed RNA polymerase II subunit RPB7 155 240 - -
Cre09g1721 612 Pfam S1 RNA binding domain 153 230 IPR003029 GO:0003676(InterPro)
Cre09g1721 612 Gene3D - 74 154 IPR036898 -
       

Pathway


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g1721 K02148 - - csv:101221574 711.449
       

Syn-Families


Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre08g1606 . 1 831 Primary Pumps ATPases(2) AT1G10130 84.1 0.0e+00 1374.4
Cre02g2386 . 1 840 Primary Pumps ATPases(2) AT2G28520 79.0 0.0e+00 1328.9
Cre02g0838 . 10 813 Primary Pumps ATPases(2) AT2G28520 62.8 1.3e-292 1002.7
Cre08g1408 . 1 774 Primary Pumps ATPases(2) AT2G28520 61.2 1.1e-285 979.5
Cre02g0838 . 6 818 Primary Pumps ATPases(2) AT2G21410 75.7 0.0e+00 1233.0
Cre08g1408 . 1 779 Primary Pumps ATPases(2) AT2G21410 71.3 0.0e+00 1147.1
Cre02g2386 . 9 844 Primary Pumps ATPases(2) AT2G21410 60.7 1.8e-294 1008.8
Cre02g0838 . 1 818 Primary Pumps ATPases(2) AT4G39080 76.4 0.0e+00 1235.3
Cre08g1408 . 1 779 Primary Pumps ATPases(2) AT4G39080 72.1 0.0e+00 1151.3
Cre02g2386 . 9 844 Primary Pumps ATPases(2) AT4G39080 61.6 2.0e-293 1005.4
Cre08g1397 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.5e-60 229.2
Cre08g1398 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.5e-60 229.2
Cre11g1987 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.5e-60 229.2
Cre08g1397 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 1.5e-66 249.6
Cre08g1398 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 1.5e-66 249.6
Cre11g1987 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.3 3.4e-66 248.4
Cre08g1397 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.8e-74 274.2
Cre08g1398 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.8e-74 274.2
Cre11g1987 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.8e-74 274.2
Cre11g1987 . 1 122 Primary Pumps ATPases(2) AT1G19910 99.2 5.9e-53 203.8
Cre08g1397 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.3e-52 202.6
Cre08g1398 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.3e-52 202.6
Cre05g1876 . 4 180 Primary Pumps ATPases(2) AT2G25610 82.5 2.0e-70 262.7
Cre08g1242 . 4 180 Primary Pumps ATPases(2) AT2G25610 84.2 3.4e-70 261.9
Cre08g1397 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 4.3e-60 227.6
Cre08g1398 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 4.3e-60 227.6
Cre11g1987 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 4.3e-60 227.6
Cre05g1876 . 11 180 Primary Pumps ATPases(2) AT4G32530 77.5 5.2e-73 271.2
Cre08g1242 . 1 180 Primary Pumps ATPases(2) AT4G32530 73.3 1.7e-71 266.2
Cre03g0492 . 1 1065 Primary Pumps ATPases(2) AT1G07810 80.6 0.0e+00 1671.4
Cre03g0492 . 1 1065 Primary Pumps ATPases(2) AT1G07670 80.3 0.0e+00 1671.0
Cre08g1606 . 1 831 Primary Pumps ATPases(2) AT1G10130 84.1 0.0e+00 1374.4
Cre03g0492 . 22 1046 Primary Pumps ATPases(2) AT4G00900 65.7 0.0e+00 1319.7
Cre03g2001 . 1 126 Primary Pumps ATPases(2) AT4G02620 84.1 4.1e-57 217.6
Cre02g0748 . 6 488 Primary Pumps ATPases(2) AT1G76030 96.1 3.7e-268 920.6
Cre10g2148 . 33 140 Primary Pumps ATPases(2) AT3G01390 80.6 4.1e-37 151.0
Cre09g1721 . 237 612 Primary Pumps ATPases(2) AT1G12840 83.5 1.2e-181 632.9
Cre01g0259 . 1010 1227 Primary Pumps ATPases(2) AT3G58730 86.7 2.0e-103 372.5
Cre10g1759 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.4 2.2e-206 715.3
Cre08g1397 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.8e-74 274.2
Cre08g1398 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.8e-74 274.2
Cre11g1987 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.8e-74 274.2
Cre02g0748 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.9 2.4e-270 927.9
Cre05g1625 . 1 184 Primary Pumps ATPases(2) AT1G64200 73.8 5.6e-66 247.7
Cre02g0748 . 9 488 Primary Pumps ATPases(2) AT1G20260 95.8 7.8e-266 912.9
Cre02g2386 . 1 840 Primary Pumps ATPases(2) AT2G28520 79.0 0.0e+00 1328.9
Cre02g0838 . 10 813 Primary Pumps ATPases(2) AT2G28520 62.8 1.3e-292 1002.7
Cre08g1408 . 1 774 Primary Pumps ATPases(2) AT2G28520 61.2 1.1e-285 979.5
Cre10g1627 . 63 404 Primary Pumps ATPases(2) AT3G28715 92.7 3.0e-187 651.4
Cre05g1625 . 1 229 Primary Pumps ATPases(2) AT4G11150 77.4 7.9e-91 330.5
Cre09g0154 . 1 623 Primary Pumps ATPases(2) AT1G78900 93.3 0.0e+00 1171.4
Cre02g0748 . 6 488 Primary Pumps ATPases(2) AT1G76030 96.1 3.7e-268 920.6
Cre02g0748 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.9 2.4e-270 927.9
Cre02g0748 . 9 488 Primary Pumps ATPases(2) AT1G20260 95.8 7.8e-266 912.9
Cre09g1721 . 237 612 Primary Pumps ATPases(2) AT1G12840 83.5 1.2e-181 632.9
Cre01g0259 . 1010 1227 Primary Pumps ATPases(2) AT3G58730 86.7 2.0e-103 372.5
Cre05g1625 . 1 229 Primary Pumps ATPases(2) AT4G11150 77.4 7.9e-91 330.5
Cre05g1625 . 1 223 Primary Pumps ATPases(2) AT3G08560 69.0 3.3e-76 282.0
Cre05g1625 . 1 184 Primary Pumps ATPases(2) AT1G64200 73.8 5.6e-66 247.7
Cre03g2001 . 1 126 Primary Pumps ATPases(2) AT4G02620 84.1 4.1e-57 217.6
Cre10g2148 . 33 140 Primary Pumps ATPases(2) AT3G01390 80.6 4.1e-37 151.0
Cre10g1759 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.4 2.2e-206 715.3
Cre02g2386 . 1 840 Primary Pumps ATPases(2) AT2G28520 79.0 0.0e+00 1328.9
Cre02g0838 . 10 813 Primary Pumps ATPases(2) AT2G28520 62.8 1.3e-292 1002.7
Cre08g1408 . 1 774 Primary Pumps ATPases(2) AT2G28520 61.2 1.1e-285 979.5
Cre02g0838 . 6 818 Primary Pumps ATPases(2) AT2G21410 75.7 0.0e+00 1233.0
Cre08g1408 . 1 779 Primary Pumps ATPases(2) AT2G21410 71.3 0.0e+00 1147.1
Cre02g2386 . 9 844 Primary Pumps ATPases(2) AT2G21410 60.7 1.8e-294 1008.8
Cre02g0838 . 1 818 Primary Pumps ATPases(2) AT4G39080 76.4 0.0e+00 1235.3
Cre08g1408 . 1 779 Primary Pumps ATPases(2) AT4G39080 72.1 0.0e+00 1151.3
Cre02g2386 . 9 844 Primary Pumps ATPases(2) AT4G39080 61.6 2.0e-293 1005.4
Cre08g1397 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.5e-60 229.2
Cre08g1398 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.5e-60 229.2
Cre11g1987 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.5e-60 229.2
Cre11g1987 . 1 122 Primary Pumps ATPases(2) AT1G19910 99.2 5.9e-53 203.8
Cre08g1397 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.3e-52 202.6
Cre08g1398 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.3e-52 202.6
Cre08g1397 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 4.3e-60 227.6
Cre08g1398 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 4.3e-60 227.6
Cre11g1987 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 4.3e-60 227.6
Cre08g1397 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 1.5e-66 249.6
Cre08g1398 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 1.5e-66 249.6
Cre11g1987 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.3 3.4e-66 248.4
Cre08g1397 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.8e-74 274.2
Cre08g1398 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.8e-74 274.2
Cre11g1987 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.8e-74 274.2
Cre05g1876 . 11 180 Primary Pumps ATPases(2) AT4G32530 77.5 5.2e-73 271.2
Cre08g1242 . 1 180 Primary Pumps ATPases(2) AT4G32530 73.3 1.7e-71 266.2
Cre05g1876 . 4 180 Primary Pumps ATPases(2) AT2G25610 82.5 2.0e-70 262.7
Cre08g1242 . 4 180 Primary Pumps ATPases(2) AT2G25610 84.2 3.4e-70 261.9
Cre10g1627 . 63 404 Primary Pumps ATPases(2) AT3G28710 95.0 2.6e-194 674.9
Cre10g1627 . 63 404 Primary Pumps ATPases(2) AT3G28715 92.7 3.0e-187 651.4
Cre03g0492 . 1 1065 Primary Pumps ATPases(2) AT1G07810 80.6 0.0e+00 1671.4
Cre03g0492 . 22 1046 Primary Pumps ATPases(2) AT4G00900 65.7 0.0e+00 1319.7
Cre08g1606 . 1 831 Primary Pumps ATPases(2) AT1G10130 84.1 0.0e+00 1374.4
Cre03g0492 . 1 1065 Primary Pumps ATPases(2) AT1G07670 80.3 0.0e+00 1671.0
       

Syn-Orthogroups


Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007861 1 1 1 1 1 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 36