Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g1721 ATGCAGCAGATGGGGCAGCCCAGCCGCCCCTCCCCCCTAGCCGCCTACCTACTCGCCTGGCGTGCATCCGGTTCGGTCAACAATAAGAGATTCTGTCCTCCACAGGTCTCGTCCCGTCGTCGCAGAGAATCCGCCGCAGGTCCCGTCGCGTCATCGCAAAGGTTCCCTGCCGCCGCTGCGGCTGCAGTCGCCCGTGACCTATTTGTAAAGAGAGCAGCCAGTATGTTCTTCCACATAGTTTTAGAGAGGAATATGCAGCTACATCCACGGCACTTTGGCCGTAACCTCCGTGAGAACCTCGTCTCAAAACTTATGAAAGATGTTGAAGGCACTTGCAGTGGCCGACATGGTTTTGTTGTGGCAATTACGGGAATTGAGAATATTGGGAAAGGGTTGATCCGTGATGGAACAGGTTTTGTCACTTTTCCTGTTAAGTACCAATGTGTCGTGTTTAGACCATTCAAGGGAGAAATTTTAGAAGCCGTTGTTACTATGGTAAATAAGATGGGTTTCTTTGCTGAAGCTGGACCTGTTCAGATTTTTGTTTCAAACCATTTGATACCAGATGATATGGAGTTCCAGTCTGGAGATGTGCCAAACTATACCACCTCGGATGGATCAGTTAAGATTCAGAAAGACAGTGAAGTTCGATTAAAGATAATTGGGACTCGAGTAGATGCAACTGAAATTCTTGTAAACAAAGCTGTAATGGCGAGCCGATACTGGATGGTCTCTTTACCTGTTCAAGGCTCCGCTTCTTCCCTTTGGAATCGTCTCCAAGAACAAATCTCCAAGCACTCTTTCGATACTCCTCTTTACAGATTCAATATTCCTAATCTCCGTGTTGGAACGCTCGATTCGCTCCTTTCTCTCAGCGATGATCTTCTGAAGTCGAACAGCTTTGTGGAAGGAGTTTCTCAGAAGATCAGACGGCAGATCGAGGAACTGGAGAGGGTTTCAGGTGTGGAGAGCAATGTTTTGACGGTTGATGGAGTCCCCGTTGATTCGTATCTTACTAGGTTTGTGTGGGATGAAGCCAAGTACCCGACAATGTCGCCTCTGAGAGACATTGTGGATAGCATTCACAGTCAAGTGGCCAAGATTGAGGATGACCTCAAGATTCGTGTTGCTGAGTACAATAATGTGCGGAGTCAACTTAATGCCATTAACAGAAAGCAAAGTGGAAGCTTGGCAGTCCGTGATATTTCCAATCTTGTAAAACCAGAGGACATAATTACCTCAGAACATCTAGCAACCCTTCTAGTGATTGTTCCCAAGTACTCTCAGAAAGAGTGGCTATCTAGCTATGAAACACTGACTAACTATGTGGTTCCCAGGTCTTCGAAGAAGTTATACGAGGATAATGAATATGCCCTTTACACTGTAACACTCTTTAGTCGCGTTGCAGACAATTTCAAAACAAGTGCACGTGAAAAAGGGTTCCAGATTCGTGAATTTGAATATAGTCCAGAAGCACAAGAGAGTAGAAAACAGGAGTTAGAAAAGTTGGTGCAGGACCAGGAAAGTTTGAGAAGTTCTTTATTGCAGTGGTCCTACGCTAGTTATGCTGAGGTTTTCATTTCCTGGATGCACTTCTGTGCCGTACGTGTGTTTGCTGAGAGTATCCTGAGATATGGTTTACCACCATCCTTCTTGGCATCTGTTTTGGCACCATCTGTTAAAAGTGAGAAGAAAGTAAGATCAATCCTTGAAGGTTTGTGCGACAGTGCCAACAGTACATATTGGAAAACTGAAGATGAAGTGGGAGGAGGGATGGTTGGTCTTGGAGGAGATTCTGATGCATACCCATATGTCTCCTTCACAATCAATCTTGCTTAA 1839 45.46 MQQMGQPSRPSPLAAYLLAWRASGSVNNKRFCPPQVSSRRRRESAAGPVASSQRFPAAAAAAVARDLFVKRAASMFFHIVLERNMQLHPRHFGRNLRENLVSKLMKDVEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQSGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEILVNKAVMASRYWMVSLPVQGSASSLWNRLQEQISKHSFDTPLYRFNIPNLRVGTLDSLLSLSDDLLKSNSFVEGVSQKIRRQIEELERVSGVESNVLTVDGVPVDSYLTRFVWDEAKYPTMSPLRDIVDSIHSQVAKIEDDLKIRVAEYNNVRSQLNAINRKQSGSLAVRDISNLVKPEDIITSEHLATLLVIVPKYSQKEWLSSYETLTNYVVPRSSKKLYEDNEYALYTVTLFSRVADNFKTSAREKGFQIREFEYSPEAQESRKQELEKLVQDQESLRSSLLQWSYASYAEVFISWMHFCAVRVFAESILRYGLPPSFLASVLAPSVKSEKKVRSILEGLCDSANSTYWKTEDEVGGGMVGLGGDSDAYPYVSFTINLA 612
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 35447480 35463619 - CrPI670011_09g017210.1 Cre09g1721 508389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g1721 612 SUPERFAMILY Nucleic acid-binding proteins 152 234 IPR012340 -
Cre09g1721 612 SUPERFAMILY Vacuolar ATP synthase subunit C 237 611 IPR036132 GO:0015078(InterPro)|GO:0033180(InterPro)|GO:1902600(InterPro)
Cre09g1721 612 CDD S1_RNAPII_Rpb7 155 230 - -
Cre09g1721 612 FunFam DNA-directed RNA polymerase II subunit RPB7 75 154 - -
Cre09g1721 612 Pfam V-ATPase subunit C 241 605 IPR004907 GO:0033180(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cre09g1721 612 Gene3D - 155 241 IPR012340 -
Cre09g1721 612 Gene3D Vacuolar atp synthase subunit c; domain 1 242 570 - -
Cre09g1721 612 Pfam SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 82 138 IPR005576 GO:0006351(InterPro)
Cre09g1721 612 SUPERFAMILY N-terminal, heterodimerisation domain of RBP7 (RpoE) 75 152 IPR036898 -
Cre09g1721 612 CDD RNAP_II_Rpb7_N 76 155 - -
Cre09g1721 612 FunFam V-type proton ATPase subunit C 399 487 - -
Cre09g1721 612 CDD V-ATPase_C 241 609 IPR004907 GO:0033180(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cre09g1721 612 Gene3D - 277 548 - -
Cre09g1721 612 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 237 611 IPR004907 GO:0000221(PANTHER)|GO:0033180(InterPro)|GO:0046961(PANTHER)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cre09g1721 612 Gene3D - 399 487 - -
Cre09g1721 612 FunFam DNA-directed RNA polymerase II subunit RPB7 155 240 - -
Cre09g1721 612 Pfam S1 RNA binding domain 153 230 IPR003029 GO:0003676(InterPro)
Cre09g1721 612 Gene3D - 74 154 IPR036898 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g1721 K02148 - csv:101221574 711.449