Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g1746 ATGTCTTCTTCTCTTTCATGGTTCTTCTTCTTTTCCCTCTCCTTTACGTTTTCCGGTACGGCCGCCTCGGTTTCCGATGATGCAATGTCGCTCCTCATGTTTAAGGGCTCGATTTCGCTCGGAGGCTCTGGTGTTCTTCGTGGCTGGAATTTGTCTCTTTCTCACTGCCAGTGGTTTGGAGTTACTTGCGATGGTGTTAACGGTAGAGTTGTTGCGCTGAATATCAGTGGAAATGGTGGTGTTCTGGCGGCGGGTTCTTTACTGGTTGGGAAGTTGAATCCGGCGATTGGAAATCTTGTTGAGCTTCGCGTTTTGTCGCTTCCGAATAATTTGATGTACGGGGAGATTCCGGGGAGTGTTGGTAAGCTTCAGTCGTTGGAGGTTCTAGAGCTTCAGGGGAACAATTTCTCTGGAGAGATTCCAAATCAGATAAGTTCACTTCGATCTCTTCGCCTGCTTAATTTGTCTGATAACTCGTTTTCTGGCTCGATTCCGGGTAAATTGATCGGTTCGACGCGATTAGAAGCAATTGATTTGTCGTACAATCAATTATCTGGTAGTATTCAAGTTGTTGATAATAGATGCGGTGCTTTGAATCATTTGAGGCTTTCGCATAACTTTCTGACTAATAACATTCCGGCGGAGATTGGACAATGTTGGAAACTCAGGACTCTGTTACTCGATGGTAATATATTAGAGGGGCAAATTCCGGCTGAGATCGGCCAAATTTCAGAACTCAGAATTCTTGATGTTTCTAGGAATAGCCTTACCGATTCGATTCCAAAAGGGCTTGGTAATTGCCGGAAGTTGTCACAGATCGTTTTGACGAATTTGAACGATATCAATCCCGACTACGATAGTTTAAGAGGGGAATTCAACGCCTTCAATGGAGGTATTCCTTCTGAGTTGTTATTGCTTCCAAGTCTGCAAGTTTTATGGGCACCGAGAGGGAATTTTAATGGCGAATTGCCGATTAATTGGAGTTCTTCATGCTCGCTTAGAGTTCTCAATTTAGGGCAAAATTACATCACTGGTACAATACCCGAATCGATTGGGAAATGTGCGAATCTAACTTACCTGGATTTATCTTCAAACAAGCTTCAAGGTAACCTCCCCTCCCAGCTTCGAGTTTCATGTATGGCGTATTTCAATGTTAGCCAGAACAAAATTTCTGGTGTTCTTCCCAGATTTGAGAAAGACAGTTTCTGTACGAACTTGATTCCACACGAACCAGCTCCCAGATTCTTAGATCAGGAAGACGATTGGAATTCTTACTTCAATTTTCCTGTTTGGGATTTCCCGAGATTAAATGATAATCTCATAATTTCCCATGATTTTAGCTGGAATAGGTTCAGTGGCTCATTAACTTCAGTCAAAGTGGGAGAAGAGCTTTTGGCTAATGGCCGCAAGTTCTCATACAAATTGTTGCTTAATAGCAACCAGTTCAATGGATCACTTCCCTTTGATCTGGTCTCGAACTGTAACGATATGAAGGGTGTTTCTGTTAACTTGAGTTCAAACTTAGTATCAGGTGAGATTTCTGATGCATTTTTTCTCCATTGTCGACAAATGATAGAGTTTGAGGCAGCAAGCAATGAATTAGATAACCCGATTGGACCTCAAATTGGCGACTTGCAGACGCTTCTTCGTCTCGACTTGAGAGGGAATAGATTGTCTGGAGTTTTACCTGATCAGTTGGGAAACTTGCAGAGTTTGAAATGGATGCTTTTGGGGGGAAACAATTTGACCGGAGAGATTCCATCTCGACTTAGTCGATTGACTTCTCTCGTGAGTTTAGATCTTTCTCGGAACATGTTTACAGGAGTTATCCCTGAAAGCTTCTCATATGCTTCAAGACTTGAGATTCTGTTGCTTGATCATAATAGGTTAACTGGGGAAATACCAGCATCTTTCTCTGCCCTTTCACATCTCACTAAATTGGATGTCTCTTTTAACAACCTTTCTGGCCACATTCCTCATCTTCAGCACACATTTGACTGCATTTACTTTGGTGGGAATAAGTTTCTGCATCCATGCCCAGATTCATACTCCGACTCCCCAGCTGGACTTCCGGTTCCTCTCGACGTTGCAAAGTGGAAGAGACGAAGAAAGTTTATGTCCATGATAATCGCTGTGGCTGCCTCCTCAAGTCTAATTTGCTTACTCATAATGATAGCTGTTATCATCATTGTTAAGAGAAGGCTAGGTAAACAAAATACGTTAAAGAAGAAACAAGTGGTGACTTTCTCAGATGCTCCTTCCGATCTGAATTATGATAACGTGGTCCGAGCTACCGAAAATTTCAGCCTTCGTTACCTTATCGGTACCGGTGGCTTCGGATCAACATACAAGGCTGAACTGCCCTCAGGTTTCCTTGTTGCTGTAAAGAGACTGTCCATTGGTAGGTTTCAAGGAGGCATCCAACAATTTGACGCAGAAATTCGAACTTTGGGAAGAATACGACACAAAAACCTCGTAACTCTTCTCGGGTATTACGTTGGAGAGGCTGAAATGTTCTTAGTTTACAACTATCTTTCTGGTGGGAACCTTGATACTTTCATTCACGAAAAATCTTGCAAACACGTAAAGCACTCAGTGATCCACAAGATCACTTTGGACATAGCGAGGGCTCTTGCATACCTTCATTACTCCTGTGATCCTAGGATTGTTCATAGAGACATCAAGCCTAGTAACATCTTGCTTGATGAAGACCACAACACCTACATATCAGATTTTGGGTTGGCAAGGCTTCTTGAGGTTTCAGAGACTCATGCCACAACAGATGTGGCAGGAACATTTGGATATGTTGCACCTGAATATGCTACAACTTGTAGGGTCTCGGATAAGGCCGATGTTTATAGCTTTGGAGTTGTGCTACTAGAGTTGCTTTCTGGAAAAAGATCACTCGATCGATCCTTTTCCGACTTTGGGAACGGATTTAACATTGTTACATGGACAAATATGCTGATCAAGGAAGGTCGTTTTTCCGAGCTTTTCACTCCTGAACTTTGGGAAATGGGACCTAAGGAACACTTACTTGGAATGTTAAAGCTCGCTTCCAATTGCACAGTTGAAATTCTCGCTCTTCGACCGTCGATGAAGCAGGTCGTCGAGACACTGAAACAGTTGTAA 3132 42.75 MSSSLSWFFFFSLSFTFSGTAASVSDDAMSLLMFKGSISLGGSGVLRGWNLSLSHCQWFGVTCDGVNGRVVALNISGNGGVLAAGSLLVGKLNPAIGNLVELRVLSLPNNLMYGEIPGSVGKLQSLEVLELQGNNFSGEIPNQISSLRSLRLLNLSDNSFSGSIPGKLIGSTRLEAIDLSYNQLSGSIQVVDNRCGALNHLRLSHNFLTNNIPAEIGQCWKLRTLLLDGNILEGQIPAEIGQISELRILDVSRNSLTDSIPKGLGNCRKLSQIVLTNLNDINPDYDSLRGEFNAFNGGIPSELLLLPSLQVLWAPRGNFNGELPINWSSSCSLRVLNLGQNYITGTIPESIGKCANLTYLDLSSNKLQGNLPSQLRVSCMAYFNVSQNKISGVLPRFEKDSFCTNLIPHEPAPRFLDQEDDWNSYFNFPVWDFPRLNDNLIISHDFSWNRFSGSLTSVKVGEELLANGRKFSYKLLLNSNQFNGSLPFDLVSNCNDMKGVSVNLSSNLVSGEISDAFFLHCRQMIEFEAASNELDNPIGPQIGDLQTLLRLDLRGNRLSGVLPDQLGNLQSLKWMLLGGNNLTGEIPSRLSRLTSLVSLDLSRNMFTGVIPESFSYASRLEILLLDHNRLTGEIPASFSALSHLTKLDVSFNNLSGHIPHLQHTFDCIYFGGNKFLHPCPDSYSDSPAGLPVPLDVAKWKRRRKFMSMIIAVAASSSLICLLIMIAVIIIVKRRLGKQNTLKKKQVVTFSDAPSDLNYDNVVRATENFSLRYLIGTGGFGSTYKAELPSGFLVAVKRLSIGRFQGGIQQFDAEIRTLGRIRHKNLVTLLGYYVGEAEMFLVYNYLSGGNLDTFIHEKSCKHVKHSVIHKITLDIARALAYLHYSCDPRIVHRDIKPSNILLDEDHNTYISDFGLARLLEVSETHATTDVAGTFGYVAPEYATTCRVSDKADVYSFGVVLLELLSGKRSLDRSFSDFGNGFNIVTWTNMLIKEGRFSELFTPELWEMGPKEHLLGMLKLASNCTVEILALRPSMKQVVETLKQL 1043
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 35817758 35820889 + CrPI670011_09g017460.1 Cre09g1746 508414
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cre09g1746 1043 FunFam Leucine-rich repeat receptor-like protein kinase 24 190 - -
Cre09g1746 1043 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 439 685 - -
Cre09g1746 1043 Gene3D Ribonuclease Inhibitor 287 417 IPR032675 -
Cre09g1746 1043 Gene3D Ribonuclease Inhibitor 422 688 IPR032675 -
Cre09g1746 1043 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 845 1043 - -
Cre09g1746 1043 Pfam Protein kinase domain 773 971 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre09g1746 1043 Gene3D Transferase(Phosphotransferase) domain 1 845 1043 - -
Cre09g1746 1043 SMART serkin_6 768 1043 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre09g1746 1043 ProSitePatterns Serine/Threonine protein kinases active-site signature. 889 901 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre09g1746 1043 Pfam Leucine rich repeat N-terminal domain 25 64 IPR013210 -
Cre09g1746 1043 ProSiteProfiles Protein kinase domain profile. 768 1043 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre09g1746 1043 ProSitePatterns Protein kinases ATP-binding region signature. 774 796 IPR017441 GO:0005524(InterPro)
Cre09g1746 1043 Gene3D Ribonuclease Inhibitor 194 286 IPR032675 -
Cre09g1746 1043 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 285 371 - -
Cre09g1746 1043 SUPERFAMILY L domain-like 202 681 - -
Cre09g1746 1043 SUPERFAMILY L domain-like 24 279 - -
Cre09g1746 1043 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 732 844 - -
Cre09g1746 1043 Pfam Leucine Rich Repeat 198 219 IPR001611 GO:0005515(InterPro)
Cre09g1746 1043 Pfam Leucine Rich Repeat 246 267 IPR001611 GO:0005515(InterPro)
Cre09g1746 1043 Pfam Leucine Rich Repeat 548 569 IPR001611 GO:0005515(InterPro)
Cre09g1746 1043 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 9 1042 IPR050647 -
Cre09g1746 1043 SUPERFAMILY L domain-like 475 583 - -
Cre09g1746 1043 Gene3D Phosphorylase Kinase; domain 1 730 844 - -
Cre09g1746 1043 Pfam Leucine rich repeat 595 654 IPR001611 GO:0005515(InterPro)
Cre09g1746 1043 Pfam Leucine rich repeat 332 367 IPR001611 GO:0005515(InterPro)
Cre09g1746 1043 Pfam Leucine rich repeat 101 159 IPR001611 GO:0005515(InterPro)
Cre09g1746 1043 Gene3D Ribonuclease Inhibitor 26 142 IPR032675 -
Cre09g1746 1043 Gene3D Ribonuclease Inhibitor 143 193 IPR032675 -
Cre09g1746 1043 SMART LRR_typ_2 593 616 IPR003591 -
Cre09g1746 1043 SMART LRR_typ_2 243 267 IPR003591 -
Cre09g1746 1043 SMART LRR_typ_2 641 667 IPR003591 -
Cre09g1746 1043 SMART LRR_typ_2 123 146 IPR003591 -
Cre09g1746 1043 SMART LRR_typ_2 147 171 IPR003591 -
Cre09g1746 1043 SMART LRR_typ_2 545 568 IPR003591 -
Cre09g1746 1043 SMART LRR_typ_2 195 219 IPR003591 -
Cre09g1746 1043 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 193 282 - -
Cre09g1746 1043 SUPERFAMILY Protein kinase-like (PK-like) 746 1040 IPR011009 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre09g1746 Cre-Chr9:35817758 Cre05g2494 Cre-Chr5:36345912 1.70E-60 dispersed
Cre09g1746 Cre-Chr9:35817758 Cre07g1976 Cre-Chr7:35186442 5.60E-11 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64415 PF00069 Pkinase 5.20E-44 CL0016 Cre PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g1746 - - - 0.0