Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g1758 ATGGATACATTTTCCTTCAAATGTATTAAACTATCGCCTCCCTCCCTTTTTAATCTCTTTCACGAGAAGAGAAGAAGCCATGGGCAGAATCATGTTAATCTAGGATATTCATTTCATTCCTCATTTTGTAAATCTATTGCTCCATTCTTTCATGATTTGCGTGCACGTTATTTAAAGCTGGAGATGTCAACCCAGCAGCAAAATTCTGATTCAAATGGCGTTTCAGGCGCCTGTCTCTTTGATCTCCTGTTTCCAGATTCAGAAATGCAAGGCTGGGACTGGAGTCGGATGCCCTCTGATTCAGAAACGCAACGCTGGAATTGGAAGAAAGACCAACAGCTCTCTGGCCCCCAGAAAAGGTTAGAAGATCTGTTGCGGCAGTCTGGTAATAAGTTTTGTGCAGATTGCGGAGCACCGGACCCAAAATGGGTATCGTTAAATTTGGGAGTGTTTATCTGTATAAAGTGTTCTGGAGTACACAGAAGTCTTGGAGTTCATATCTCTAAGGTTTTCTCAGTGAAATTAGATAATTGGACGGATGAACAAGTCAATACTTTGATGGGCATGGGCGGAAACACAGATGTAAACAAGAAGTATGAAGCCGGCATCATCGATGGGAACAGAAAACCAAAACCAGATTCTTGTATAGAGGAGCGCTTCGATTTTATAAGGAGAAAGTATGAACTGCTGCAATTTTATAACGCCACTAGTCAAAATTCTAGCGATAACTCATTTAGTAAAAGAAGTTCATCATGCTCCCAAAGTAGTAACCCTTCGAGCAAGAATGGTAGCCACGACAAAAGACACTATGAGAAACAAGCTACTAGGCATCGCATTGGGCATGCATTTCGTAACAGCCGAGTAAGAAGAGATAGTGACCACAAGAGTTTTGACAAGAGCAGCCCTGCAGTCTCAAGACAAGCATCGGCAGGTATGGTTGAATTTGTTGGCTTGGTTAAGGTCAATGTGGTTAGAGGCACAAACTTAGCTGTCCGAGATGTGGTGACCAGCGATCCCTATGTAATTCTCACGTTGGGTCATCAATCGGTGAGGACTCGTGTCATAAAGAACAACCTAAACCCAGTTTGGAACGAGAGCCTAATGTTATCAATTCCCGAGCATATCCCTCCGCTAAAGCTGCTTGTCTATGATAAGGACACATTTTCGACTGATGACTTTATGGGTGAGGCCGAAATCGACATTCAACCGTTGGTCGCTGCAACCAAGGCCTATGAGAAATCCACAATTGATGAATCAATGCAGCTGGGAAAATGGGTGGCAAGTAATGACAATACCTTGGTAAAAGATGGAATCATTAACCTTGTAGATGGAAAGGTCAGACAGGATATATCTCTTAGATTGCAGAATGTGGAGAGAGGTATCCTTGAGATTGAGCTAGAATGCATTCCTCTTACACAATAG 1422 42.62 MDTFSFKCIKLSPPSLFNLFHEKRRSHGQNHVNLGYSFHSSFCKSIAPFFHDLRARYLKLEMSTQQQNSDSNGVSGACLFDLLFPDSEMQGWDWSRMPSDSETQRWNWKKDQQLSGPQKRLEDLLRQSGNKFCADCGAPDPKWVSLNLGVFICIKCSGVHRSLGVHISKVFSVKLDNWTDEQVNTLMGMGGNTDVNKKYEAGIIDGNRKPKPDSCIEERFDFIRRKYELLQFYNATSQNSSDNSFSKRSSSCSQSSNPSSKNGSHDKRHYEKQATRHRIGHAFRNSRVRRDSDHKSFDKSSPAVSRQASAGMVEFVGLVKVNVVRGTNLAVRDVVTSDPYVILTLGHQSVRTRVIKNNLNPVWNESLMLSIPEHIPPLKLLVYDKDTFSTDDFMGEAEIDIQPLVAATKAYEKSTIDESMQLGKWVASNDNTLVKDGIINLVDGKVRQDISLRLQNVERGILEIELECIPLTQ 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 35942877 35955698 - CrPI670011_09g017580.1 Cre09g1758 508426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g1758 473 MobiDBLite consensus disorder prediction 237 303 - -
Cre09g1758 473 MobiDBLite consensus disorder prediction 237 261 - -
Cre09g1758 473 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 315 473 - -
Cre09g1758 473 FunFam stromal membrane-associated protein 1 isoform X1 102 238 - -
Cre09g1758 473 Pfam Putative GTPase activating protein for Arf 119 234 IPR001164 GO:0005096(InterPro)
Cre09g1758 473 Pfam C2 domain 318 406 IPR000008 -
Cre09g1758 473 SMART arf_gap_3 118 241 IPR001164 GO:0005096(InterPro)
Cre09g1758 473 SUPERFAMILY ArfGap/RecO-like zinc finger 118 234 IPR037278 -
Cre09g1758 473 PRINTS HIV Rev interacting protein signature 170 191 IPR001164 GO:0005096(InterPro)
Cre09g1758 473 PRINTS HIV Rev interacting protein signature 130 149 IPR001164 GO:0005096(InterPro)
Cre09g1758 473 PRINTS HIV Rev interacting protein signature 149 166 IPR001164 GO:0005096(InterPro)
Cre09g1758 473 SMART C2_3c 318 413 IPR000008 -
Cre09g1758 473 Gene3D Arf GTPase activating protein 99 241 IPR038508 -
Cre09g1758 473 CDD C2_ArfGAP 316 460 - -
Cre09g1758 473 Gene3D C2 domain 316 470 IPR035892 -
Cre09g1758 473 MobiDBLite consensus disorder prediction 285 300 - -
Cre09g1758 473 ProSiteProfiles C2 domain profile. 298 415 IPR000008 -
Cre09g1758 473 CDD ArfGap 121 227 - -
Cre09g1758 473 ProSiteProfiles ARF GTPase-activating proteins domain profile. 118 240 IPR001164 GO:0005096(InterPro)
Cre09g1758 473 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 314 408 IPR035892 -
Cre09g1758 473 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 108 473 IPR044518 GO:0005096(InterPro)|GO:0005543(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre03g1100 Cre-Chr3:10416310 Cre09g1758 Cre-Chr9:35942877 2.50E-90 dispersed
Cre09g1758 Cre-Chr9:35942877 Cre09g1896 Cre-Chr9:37696717 1.80E-28 dispersed
Cre09g1758 Cre-Chr9:35942877 Cre04g2119 Cre-Chr4:38444297 2.90E-92 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g1758 K12486 - csv:101215531 743.806