Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g1760 ATGGCATCTGGAAGTCCTTATTTTGATGATTTGCGGAGCAAACCAGAGGTTATTGATCCTCCTCAGAATGAAGATATGATGGACATCAGGGAAACCGTGGATGATCCAGTTCAAAATGAACTTAAACCGAACGCTGCTGTCTCCAGCAGCGTTCGCGAGCTTTTGGAATGCCCAGTGTGTTTGAACGCAATGTACCCTCCAATACATCAGTGCTCAAATGGCCACACACTGTGCTCTGGTTGCAAGCCTCGGGTGCACAATCGCTGCCCTACATGTAGGCATGAACTTGGCAATATTAGATGCCTTGCGTTGGAGAAGGTGGCCGCATCTCTAGAACTTCCGTGTAAATATCATAGCTATGGTTGCATTGGCATATATCCATATTACAGCAAGGTCAAACATGAATCCCAATGTGTTTATAGACCTTATAGCTGTCCATATGCTGGATCCGAATGTTCAGTCGTCGGTGATATACCCTATTTGGTGGCCCACCTGAAAGACGATCATAAAGTAGACATGCACAGTGGAAGCACATTCAACCATCGTTATGTAAAATCAAACCCACAAGAAGTTGAAAATGCAACGTGGATGCTAACGGTTTTCAGTTGCTTTGGTCAGTACTTTTGCCTGCATTTCGAAGCTTTCCAGCTCGGGATGGCTCCAGTATACATCGCTTTTTTACGGTTCATGGGTGATGATAATGATGCAAAGAACTACAGCTATAGTCTTGAGGTGGGTGGAAATGGGAGGAAGATGGTTTGGCAAGGGGTGCCCAGAAGCATCAGGGACAGCCATCGGAAAGTTCGGGACAGCTTCGATGGGCTCATTATCCAACGCAACATGGCTCTCTTCTTCTCTGGTGGGGACCGGAAGGAACTTAAGCTTAGAGTGACTGGTAGAATTTGGAAAGAACAGTGA 918 46.08 MASGSPYFDDLRSKPEVIDPPQNEDMMDIRETVDDPVQNELKPNAAVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYHSYGCIGIYPYYSKVKHESQCVYRPYSCPYAGSECSVVGDIPYLVAHLKDDHKVDMHSGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNDAKNYSYSLEVGGNGRKMVWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 35969899 35971562 - CrPI670011_09g017600.1 Cre09g1760 508428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g1760 305 Pfam Sina, TRAF-like domain 201 298 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Cre09g1760 305 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 51 99 IPR013083 -
Cre09g1760 305 FunFam E3 ubiquitin-protein ligase SINAT5-like 15 108 - -
Cre09g1760 305 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 57 92 IPR049548 -
Cre09g1760 305 SUPERFAMILY RING/U-box 51 98 - -
Cre09g1760 305 CDD RING-HC_SIAHs 55 93 - -
Cre09g1760 305 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 42 300 IPR052088 GO:0005737(PANTHER)|GO:0061630(PANTHER)
Cre09g1760 305 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 166 298 IPR008974 GO:0005515(InterPro)
Cre09g1760 305 Pfam Sina, zinc finger 106 181 - -
Cre09g1760 305 FunFam E3 ubiquitin-protein ligase SINAT3 109 165 - -
Cre09g1760 305 ProSiteProfiles Zinc finger RING-type profile. 57 93 IPR001841 -
Cre09g1760 305 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 165 IPR013083 -
Cre09g1760 305 FunFam E3 ubiquitin-protein ligase SINAT5-like 166 298 - -
Cre09g1760 305 MobiDBLite consensus disorder prediction 1 25 - -
Cre09g1760 305 CDD Sina 171 299 - -
Cre09g1760 305 SUPERFAMILY TRAF domain-like 110 302 - -
Cre09g1760 305 ProSiteProfiles Zinc finger SIAH-type profile. 110 170 IPR013010 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2840 Cre-Chr5:39042782 Cre09g1760 Cre-Chr9:35969899 7.30E-168 dispersed
Cre06g0897 Cre-Chr6:2315223 Cre09g1760 Cre-Chr9:35969899 1.00E-130 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g1760 K04506 - csv:101220834 644.039