Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g1774 ATGAAGCTGATTGATTGTCTGCTGACACCGCCAAAGCCTGAGAAGAAGCAAAAGAGATGGAAATGGGTGTTTGGAAGGATGAGGAACAAGAGACTAGCCACACTGACAGCACCATCGCCGGCAAAAGTGACAACCAGCCAAGAGGAGGAAGAGGAGAGGAAGCAGGCTCTTTCTGTGGCCATTGCGAGCACTGCAGCGGCCGAGGCGGCAGTTGCAGCAGCTAAAGCTGCTGTTGAGGTTGTTTGGCTCACAGGGACCCCTCAATCTCATCAACAAGAGGCTGCAGATGAAGTCGTTAAGCCTCTCAAGAAGGCCCCTCCATCTGATCTCCTTAAACGTGAAAGGGAAATCCATGATATTGCTGCTATTACTATCCAAACCGCTTTCCGTGGCTTCCTTGCGAGAAAAGCATTGAGAGCATTGAAAGGAATAGTGAGGCTACAGGCAATTATTAGAGGGAGAGCTGTTAGGCGCCAAGCCATTGCCACTTTGAAGTGCTTGCAGTCCATCGTTAGCATACAATCACAAGTCCGTTCAAATAGACTTCATCTTCCTCAAAACACTTTCAATTCTCCTGAAACGAAGCAGTTTCAGAGCTTGAAAGATAAGATCATAAAGTTGGATTCGAACGATCAAAGGTGGGATGATAGCCTATTATCAAAAGAAGAAGCAGATTCAGCGTTTTTGAGCAGGAAAGAAGCAGTGATTAGGAGAGAGCGAGTCAAGGAATACTTATTTGCCCACAGGAGGTCTGCAGAATCAGAACGAAAGAAGGTAAGAGGAAGATGGAGATACTGGCTAGACCAATGGGTCGACACCCAACTTTCCAAAAGCAAAGAACTCGAAGATTTGGACTCCATGTTCACCTCAAATCCAAAACACAATGAGATAACAAACGACAGATTCAAAACAAACCCAACAACAAAAAACATGGACAGAACAATAGAAGAACACCCCAACCAATCTCCATCACAAAAACCAGTTCTGAAAAAGCTCTCTCACCACAAGAAGCAACGTTCATTGGAAGGTGGAATAGACTCAAACGGCTCATTTTCAAGCTCCCCACTGGTGCCAACATACATGGCTGCCACTGAATCAGCAAAGGCAAAAGCAAGGTCCTTGAGCTCCCCCAAGCTAAGGCCAGCAGGGGGATTGGACACATGCTCTGATGGGAATTCTCCATGCAAGACAAAGCAGCTCAGTTTGGTGTCTTCAATGGTGAGTGAAGTTGGAATTAGCAGTGGGAGAAGAGGTTTTCATCAGCAGCAAAGATCACCAGGGCTGAAGGGACTTCCAGGGCCAACAAGATCAAGCAGAACTCTCACCAAGGATTTGAGCATTGATTCTGAGCATTCCTTGCCAAACTGGGATAGACAAAGTGCCTTCCAATGA 1392 46.41 MKLIDCLLTPPKPEKKQKRWKWVFGRMRNKRLATLTAPSPAKVTTSQEEEEERKQALSVAIASTAAAEAAVAAAKAAVEVVWLTGTPQSHQQEAADEVVKPLKKAPPSDLLKREREIHDIAAITIQTAFRGFLARKALRALKGIVRLQAIIRGRAVRRQAIATLKCLQSIVSIQSQVRSNRLHLPQNTFNSPETKQFQSLKDKIIKLDSNDQRWDDSLLSKEEADSAFLSRKEAVIRRERVKEYLFAHRRSAESERKKVRGRWRYWLDQWVDTQLSKSKELEDLDSMFTSNPKHNEITNDRFKTNPTTKNMDRTIEEHPNQSPSQKPVLKKLSHHKKQRSLEGGIDSNGSFSSSPLVPTYMAATESAKAKARSLSSPKLRPAGGLDTCSDGNSPCKTKQLSLVSSMVSEVGISSGRRGFHQQQRSPGLKGLPGPTRSSRTLTKDLSIDSEHSLPNWDRQSAFQ 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 36133532 36136445 - CrPI670011_09g017740.1 Cre09g1774 508442

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g1774 463 SMART iq_5 117 139 IPR000048 GO:0005515(InterPro)
Cre09g1774 463 Gene3D - 119 168 - -
Cre09g1774 463 Pfam IQ calmodulin-binding motif 121 139 IPR000048 GO:0005515(InterPro)
Cre09g1774 463 ProSiteProfiles IQ motif profile. 142 169 - -
Cre09g1774 463 ProSiteProfiles IQ motif profile. 118 146 - -
Cre09g1774 463 MobiDBLite consensus disorder prediction 292 353 - -
Cre09g1774 463 PANTHER IQ-DOMAIN 5-RELATED 18 396 - -
Cre09g1774 463 MobiDBLite consensus disorder prediction 413 463 - -
Cre09g1774 463 Pfam Protein of unknown function (DUF4005) 344 423 IPR025064 -
Cre09g1774 463 MobiDBLite consensus disorder prediction 296 316 - -
Cre09g1774 463 MobiDBLite consensus disorder prediction 435 463 - -
Cre09g1774 463 MobiDBLite consensus disorder prediction 371 394 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g1774 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g1875 Cre-Chr7:34143412 Cre09g1774 Cre-Chr9:36133532 9.80E-18 dispersed
Cre09g1774 Cre-Chr9:36133532 Cre10g1700 Cre-Chr10:31200951 7.50E-24 dispersed
Cre09g1774 Cre-Chr9:36133532 Cre01g0429 Cre-Chr1:3658142 8.50E-28 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cre01g0429 . 1 479 IQD Protein Family AT3G52290 54.2 2.6e-103 372.9
Cre05g2265 . 1802 2011 IQD Protein Family AT2G26410 50.7 4.8e-43 172.9
Cre03g1557 . 36 443 IQD Protein Family AT3G22190 57.8 7.9e-97 351.3
Cre05g1963 . 1 438 IQD Protein Family AT2G26180 61.6 3.8e-120 428.7
Cre04g1962 . 25 298 IQD Protein Family AT2G33990 52.1 6.1e-63 238.0
Cre07g1360 . 89 267 IQD Protein Family AT2G33990 53.3 4.0e-46 182.2
Cre04g1962 . 25 246 IQD Protein Family AT3G15050 50.5 4.6e-55 211.8
Cre07g1360 . 88 279 IQD Protein Family AT3G15050 58.2 2.5e-53 206.1
Cre09g1774 . 111 463 IQD Protein Family AT5G13460 50.1 2.6e-74 276.6
Cre06g1039 . 29 537 IQD Protein Family AT4G00820 51.3 4.0e-114 409.1
Cre03g1876 . 1 391 IQD Protein Family AT3G16490 50.5 2.5e-65 246.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007465 1 2 1 1 0 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 0 35