Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g1785 ATGGTTGTTGCTCTTGAAACCACCCGATTCCATGTTCTTGCTGTCGATGATAGCTTCATCGATAGGAAGTTGATTGAACGCCTCCTCAAAACCTCTTCCTATCATGTTACTGCAGTTGATTCCGGTACGAAGGCCTTGGAATTTCTTGGTCTTGTTGAAGATCATGATCACGATGAAGAAACAAACTCCAAAATCGCTCCCTCAAATCATCATCATCATCAAGAAGTGGATGTAAATTTGATCATCACGGATTACAGTATGCCTGGAATGAGTGGTTACGAACTCCTTAGGAAGATCAAGGAATCGAAATCTCTCAAAGACATACCAGTTGTGATTATGTCCTCTGAGAATGTTCCTTCAAGAATCAATAGATGCTTGGAAGAAGGAGCGGAAGAATTCTTCCTCAAACCAGTTCAATTGTCTGATGTGAGGAAGTTGAGACCTCATTTGATTAAAGAAAAATCCGCCAGGAATTGA 477 40.88 MVVALETTRFHVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGLVEDHDHDEETNSKIAPSNHHHHQEVDVNLIITDYSMPGMSGYELLRKIKESKSLKDIPVVIMSSENVPSRINRCLEEGAEEFFLKPVQLSDVRKLRPHLIKEKSARN 158
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 36276213 36276950 - CrPI670011_09g017850.1 Cre09g1785 508453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g1785 158 ProSiteProfiles Response regulatory domain profile. 11 151 IPR001789 GO:0000160(InterPro)
Cre09g1785 158 CDD REC_typeA_ARR 12 146 - -
Cre09g1785 158 Pfam Response regulator receiver domain 12 144 IPR001789 GO:0000160(InterPro)
Cre09g1785 158 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 153 IPR045279 GO:0009736(InterPro)
Cre09g1785 158 SMART REC_2 10 147 IPR001789 GO:0000160(InterPro)
Cre09g1785 158 Gene3D - 11 158 - -
Cre09g1785 158 SUPERFAMILY CheY-like 9 149 IPR011006 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2843 Cre-Chr5:39080935 Cre09g1785 Cre-Chr9:36276213 4.10E-53 dispersed
Cre08g0534 Cre-Chr8:17995045 Cre09g1785 Cre-Chr9:36276213 3.50E-43 dispersed
Cre09g1785 Cre-Chr9:36276213 Cre10g1736 Cre-Chr10:31659739 1.10E-51 dispersed
Cre09g1785 Cre-Chr9:36276213 Cre05g2664 Cre-Chr5:37620159 2.80E-39 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54398 PF00072 Response_reg 2.00E-20 CL0304 Cre TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g1785 K14492 - csv:101210839 280.026