Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g1800 ATGAATGGGAAGGATGAATTTGAAGTTGAGAATAGGACGAGTGATCCTATGAGTATCTCCTCCGGCTGGCAATTTGCTGCTGCTGCTAATCTCACTAATGAGTCTGTTGGATTCGTTTCTACCGGGAATCCTTCTGTTGTTAGCAATGGGGATCTAGGTGTTTCTTCTTGTCCTTCGACTTCAATGTCTAACTTATTTACTTCAACGCTTTTGAACCATCATACCGAATCGCAAAACTCGGGATTCTGCACCACTTTTAATGAACAAAACAGCATAGTTGCTTCTAATACGACTGTAGTTGATGGAGAGGGTCTGAATTCTTTGAGATCTAATGGTGATACTAGAACGCTGGGTATGGATTGGAATCAACAAAATCCATGGATGAAAGGAATTTTCTCAGGAAATGTTCCTGGAATATTTCCAGCTAATTTGTCTCAACTTCCAGCTGATTCGGCATTCATCGAACGTGCAGCAAGGTTCTCCTGCTTCAATAGCGGAGTTTTTGGGGCTCCGCCTACTGGTCCATTTGGCATTTCAGACTCTATAGGCATTCATTCTGGGAGTGGATTTGGAAGGCAAGAAGTTATTTCAAGAAATGGAGCCTCCAAAGATGTTTCTTTGCCCATGGAGCTTGAGGCTAAAGAAAAGAGTCCATCTAAGAATGAGAAAGATAGCGAAATGTCCCAAGACAGGACCAAACAGGGTTGTGTTGGTGAGTCTGGCAATGATTCTGATGAGGCGGGGTTTAGTGGTGGTCAAGACGAGCGGGGCACGTTGGGAGGTGCCATCACAGAACCATCTACTGAAGGACTGTGCTTCAAGAAAAGGAAAAGGGGTGAGCAGAATGTGGGACTTGGACAAGTTAAAGAAGCTCCACAACAAATCAATGAAACTGCAAAGAATGGAGCATTCAATCAGCAGAAGGGAGATCAAAACCCAAGTTCTACTACTAATAAGCCCGCTGGGAAGCAAGGAAAACAAGATTCTCAACCATCAGATGCTCCCAAAGAAGAATACATTCACGTTAGAGCTCGAAGAGGACAGGCAACAAACAGCCATAGTCTTGCTGAAAGGGTTAGAAGAGAAAAGATAAGTGAAAGAATGAGGCTCCTTCAGGACCTTGTGCCTGGGTGTAGTAAGGTCACTGGCAAAGCTGTAATGCTCGATGAAATCATTAACTATGTACAGTCACTGCAACGGCAAGTTGAGTTTTTGTCAATGAAACTTGCAACGGTTAATCCCAGGCTGGATTTTAACATCGAAGAGCTCCTCGCAAAAGAAATCATTCAATCAAAGGCTGGTCCATCTTTGTTCGGTTTTCCTCCTGATCTGCCTGTGCCTTACCTCCCGCAGCATCCGTCTCACCATGGACTTATTCCGCCTTGTCTTCCTAACATGGGGAGTTCTCCGGACCTGCTACGAAGAACAATTAATTCTCAGCTGACATCACTTGTTGGTGGATTCAAGGAGCCCGTTCAGCTACCAAACCGATGGGAGAATGAACTCCACAATGTTGTTCCGATGAACTTTGATGTCACCGCACCTTCCAGTGGCCAAGATGTTGATGGTTCTACTCCACAATGCAACACCAGAGCAGAACTCTAA 1605 44.67 MNGKDEFEVENRTSDPMSISSGWQFAAAANLTNESVGFVSTGNPSVVSNGDLGVSSCPSTSMSNLFTSTLLNHHTESQNSGFCTTFNEQNSIVASNTTVVDGEGLNSLRSNGDTRTLGMDWNQQNPWMKGIFSGNVPGIFPANLSQLPADSAFIERAARFSCFNSGVFGAPPTGPFGISDSIGIHSGSGFGRQEVISRNGASKDVSLPMELEAKEKSPSKNEKDSEMSQDRTKQGCVGESGNDSDEAGFSGGQDERGTLGGAITEPSTEGLCFKKRKRGEQNVGLGQVKEAPQQINETAKNGAFNQQKGDQNPSSTTNKPAGKQGKQDSQPSDAPKEEYIHVRARRGQATNSHSLAERVRREKISERMRLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIEELLAKEIIQSKAGPSLFGFPPDLPVPYLPQHPSHHGLIPPCLPNMGSSPDLLRRTINSQLTSLVGGFKEPVQLPNRWENELHNVVPMNFDVTAPSSGQDVDGSTPQCNTRAEL 534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 36444904 36447477 + CrPI670011_09g018000.1 Cre09g1800 508468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g1800 534 MobiDBLite consensus disorder prediction 302 329 - -
Cre09g1800 534 Gene3D - 345 419 IPR036638 GO:0046983(InterPro)
Cre09g1800 534 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 348 398 IPR011598 GO:0046983(InterPro)
Cre09g1800 534 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 145 449 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Cre09g1800 534 SMART finulus 354 404 IPR011598 GO:0046983(InterPro)
Cre09g1800 534 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 346 417 IPR036638 GO:0046983(InterPro)
Cre09g1800 534 CDD bHLH_AtBPE_like 338 423 - -
Cre09g1800 534 MobiDBLite consensus disorder prediction 200 275 - -
Cre09g1800 534 MobiDBLite consensus disorder prediction 302 335 - -
Cre09g1800 534 MobiDBLite consensus disorder prediction 208 230 - -
Cre09g1800 534 FunFam Basic helix-loop-helix transcription factor 345 417 - -
Cre09g1800 534 MobiDBLite consensus disorder prediction 513 534 - -
Cre09g1800 534 Pfam Helix-loop-helix DNA-binding domain 351 399 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2509 Cre-Chr5:36511011 Cre09g1800 Cre-Chr9:36444904 2.00E-110 dispersed
Cre06g2342 Cre-Chr6:31363236 Cre09g1800 Cre-Chr9:36444904 3.70E-28 dispersed
Cre08g0849 Cre-Chr8:21595971 Cre09g1800 Cre-Chr9:36444904 6.80E-34 dispersed
Cre08g1617 Cre-Chr8:28658372 Cre09g1800 Cre-Chr9:36444904 1.20E-34 dispersed
Cre09g0809 Cre-Chr9:8075744 Cre09g1800 Cre-Chr9:36444904 5.40E-41 dispersed
Cre09g1800 Cre-Chr9:36444904 Cre10g1844 Cre-Chr10:33003441 2.40E-34 dispersed
Cre09g1800 Cre-Chr9:36444904 Cre02g0851 Cre-Chr2:5344030 1.20E-41 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54400 PF00010 HLH 6.60E-06 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g1800 - - - 0.0