Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g1816 ATGAATGGAGATGTAGCTCCGGCCGCCGCTCCGGCGGGCTCCGCCGAGCCCCAGTACGTCAGGGCTAAGACTTCTGTATGGTGGGACATCGAGAACTGTCAGGTCCCTAAGGGCTGCGATCCTCACGCCATCGCACAAAACATCAGTTCCGCCCTCGTTAAGATCAACTATTGCGGCCCTGTTTCCATTTCCGCTTACGGAGACACTAATCGCATTCCCAATTCTATTCAGCAAGCTCTTTCCAGTACTGGCATCGCCTTGAATCATGTCCCTGCCGGTGTTAAAGATGCAAGTGACAAGAAGATTCTAGTCGATATGTTGTTTTGGGCAGTTGATAACCCTGCTCCTGCAAATTATTTGCTAATTTCCGGTGATAGGGATTTTTCTAACGCACTTCATCAATTAAGAATGAGAAGATATAATATTCTTCTTGCACAGCCACAAAAGGCTTCTGCACCACTAGTTGCAGCAGCAAAGAGTATTTGGCTTTGGATGAGTCTTGTAGCTGGAGGACCCCCAATGTCCAGTGCTGAATCATCTCAACTTGTGAATGGTATCCTTACTTCTGACCCGCAAATATCACAGGGCTCTGGATTTGATCACAATCAGCAGACAGGACAAGCTATAGTATATAAATCTGAAAATGTCTCTTTGGGAAACCAAAGATCGTATTCTACTGAGAGGATGGGCGACAACAAGCATAAAGGTAAATATATACAGAAAAGCTCCAACCAACCAGTCCTATCCAGAGCTTTAAGCTCACCTGTTTCTATGCAAGAGAAAAACCCTAATTTTTTAAACCAACCGAATCATATGCAAGCAAAGCAGTTTAAGAAAGCACCCCATGAATTCTTTGGTAATAGCAATCCTATAGCCTCTTCTAGTCAGTCTATTCCAACCCCGTTTATTGAAAACTCCAGTCATGCTAGGACTGATGGCAATGTTCCAACGGGTAGTTCCTCGAGTTACCAATCTCCTCACATGGGTCTTGCTAGGACTGATGGCAATATGTCAATGGGTAGTTCTTCAAGTTACCAACCTCCCCACATGAGGCAAAACAACATGCAGCTCCATCCTCCTTTTCGACCAGATAATGTTTTTCCGCCCAACTCCCTTAATCATAATTCTTTTCCAGTCCCTGGTCAACCTGATCTCTCTGCACCCAATATTAGTAAACTACATATCTCTGATTATCCCAATTATGCTATAAATCCTCAAAATTTCCATCATCAAGCTGGTGAATTTAGACCACATACCAAATCTCAAAATCCAAACTTTAATTCACCAGACAAAGGCCGTAGTCAGCATGGTGGCCATTCATTCCATCATGATGCATTGAATAAAAGACATGCTCGTGATGTAGTAGAGTATACACCTCATTCATCTTCTACCACTGTTACTAGAAGTTTATCTTATAATGATGCCTGGGGATCTCAGGGGCAACCCCCACCTTCGGAGTACATTCAAGGCCTTATTGGAGTTATTCTTCTTGCATTAAACACCCTGAAAACAGAAAAAATTATGCCAACTGAGGCAAATATAGCTGACTGCATCCGATATGGAGATTTGAGAAACAGCAATACTGATGTAAAAATGGCACTAGATAGTGCGATAGAGCATAATATGGTAGTGAAGCAGAATTTAGGAGCAGTGCAATTGTATGTTGGTAAAACAGAAAAACTGTGGAAGTGTGTGAACCCTCTAGGTGGGCATCCTAATCAATACCAAAAAGCTATATGGGATAAGATTCATAATTGTTTAGCTTCTCCAGCTGGTCGATCTGCAATAATGGCCTCTCGTTGCAGATATGAAGCAGCATTGATTCTGAAGAAAGAATGCTTAACAGATTTTGCCTTGGGCGATGTGCTTCAGATTTTGAATATGATAACCTCAATGAAGAAATGGATTACTCATCACATTTCAGGATGGCAGCCAATTAATATTATGCTAACAGAAGTTAACACAGATGCAAGTTCAAGAACTGAACTTGATTGA 1995 42.21 MNGDVAPAAAPAGSAEPQYVRAKTSVWWDIENCQVPKGCDPHAIAQNISSALVKINYCGPVSISAYGDTNRIPNSIQQALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPANYLLISGDRDFSNALHQLRMRRYNILLAQPQKASAPLVAAAKSIWLWMSLVAGGPPMSSAESSQLVNGILTSDPQISQGSGFDHNQQTGQAIVYKSENVSLGNQRSYSTERMGDNKHKGKYIQKSSNQPVLSRALSSPVSMQEKNPNFLNQPNHMQAKQFKKAPHEFFGNSNPIASSSQSIPTPFIENSSHARTDGNVPTGSSSSYQSPHMGLARTDGNMSMGSSSSYQPPHMRQNNMQLHPPFRPDNVFPPNSLNHNSFPVPGQPDLSAPNISKLHISDYPNYAINPQNFHHQAGEFRPHTKSQNPNFNSPDKGRSQHGGHSFHHDALNKRHARDVVEYTPHSSSTTVTRSLSYNDAWGSQGQPPPSEYIQGLIGVILLALNTLKTEKIMPTEANIADCIRYGDLRNSNTDVKMALDSAIEHNMVVKQNLGAVQLYVGKTEKLWKCVNPLGGHPNQYQKAIWDKIHNCLASPAGRSAIMASRCRYEAALILKKECLTDFALGDVLQILNMITSMKKWITHHISGWQPINIMLTEVNTDASSRTELD 664
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 36560590 36563624 - CrPI670011_09g018160.1 Cre09g1816 508484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g1816 664 PANTHER LIMKAIN B LKAP 13 542 IPR024768 GO:0005777(InterPro)|GO:0010468(InterPro)
Cre09g1816 664 MobiDBLite consensus disorder prediction 304 353 - -
Cre09g1816 664 Pfam OST-HTH Associated domain 599 655 IPR025677 -
Cre09g1816 664 MobiDBLite consensus disorder prediction 222 247 - -
Cre09g1816 664 Pfam NYN domain 23 159 IPR021139 GO:0004540(InterPro)
Cre09g1816 664 Gene3D - 18 165 - -
Cre09g1816 664 CDD PIN_limkain_b1_N_like 23 147 - -
Cre09g1816 664 MobiDBLite consensus disorder prediction 413 442 - -
Cre09g1816 664 MobiDBLite consensus disorder prediction 417 434 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0417 Cre-Chr2:1357459 Cre09g1816 Cre-Chr9:36560590 1.30E-36 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g1816 - - - 0.0