Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g1828 ATGCCTTTCAGTAATCATCAATCTTCTATAAATCTTTGTAAGCATATGGTCACTTATGGAATGGGTGAAGTCATAATGAAAATCTACCTCATCCCATGGGACTGGAGTTTTTGCCAAGAAATCTTCCTAGGGTGGCAAAATTCCTGTGAAACTCAGAACATTCCTCTGATGATCTCCTTCTCTCAATTCTATGAATGCACCAAGTCCACCAACAACATAGTTCGTAGGAGGAGACCTCGGACCTCTCTCTTCCCTTGTTTGGCTGTTTTGATTGATCAAGCCAATGAACCAGAATCCCATCTGAAATCGTCAAAACCAACTGTCATCAATCTCGTCACTTGCCGTGTTCACCAGACCATTGTTGTTCTTTGGTGGATCGAATTGAATAGATTGACATCAGTACCATGGGTCCTTAGCCTGTGGTTGGGTGAACTATTGTACAGCTTTTCATCCGTTGGACCTTTTGGTCAGAAAAATACGAAGGTCCTTCAACTCTTTATAGAGGGATTATGGGGCTCCTTTTGGCTACGGTCATATTCTTCTTTAGAGTTTGGTTCCCATTTCAGGAGCCGCAGTGTAGGGAACAAAACTCGGTACGGATGCCTAAGAGCAGAGCTTAGGTGGTTGGTTTGGGAGAGAGCTTATTTCGGCACATCAATTGTAGAAGCCATTCATGTTGATGGCTGCCATATCGGCATAAGTTCATTACCTATTCACACTGTGGGAGTAGAAGAAGATCGCTCAAGTCTTGAAAATAGTGGGTCTTCCAGGTTGTCTTATGACTCTTTAACTGTAGAGGATATTTCACCTATTGAAGCAGCACGAGCAAGATTTCTGCAGATCATTGTGGATCATTTTATTGATGATCATGTACTCGAAGTGACTGAGACTGACAATGATTATATCTCTCAGTCTGGACAGGATAAATTGACAAAGAGGAAGACGAAGGAAGTTCAGTATGAAGGGGACCCAAAATTTGTCTTACCCTTGATGTATGTTGCAAATATGTATGAAACACTTGTTAATGATGCAAACATCAGGCTTGCTTCCTTGAGTGGCATCCGTGATAAAACTATTGGGGTAGCCCTTGAAGCAGCTGGAGGTTTGTACAGAAAGCTGGCTCAGAAATTCCCCAAAAAAGGCCCTTGCACATATAAGAGAAGAGAACTCGCAACTTCTCTTGAGACAAGGACTAGGTTTCCAGAACTAGTAGTTCAAGAAGAGAAGCGGGTCCGTTTTGTGGTTGTTAATGGTTTAGACATTGTTGAAAAACCCAATGGAATGCCGATTGAAGATGCTGAATGGTTTAGACGATTAACAGGTCGCAATGAGGTAGCTGTATCTGCTCAGGACTACAAGTTCTATTCACCAAGGCATAAATATAGGCGAGTTGCAGCAAATTCTGTGTCCAGCATTTCCAGTTTGAATACATTTTCCAGCGGTGACAATTCTTCTACTCTGACTAGTGGTCAAGCATTCCGCTCTCCGGGTGAACAACAAACACCCTGCAAACATCATATCCAACAACTGCCTCATCAGCCTCAATTTCAGTCTATCCACCAGAATCATCATCAGTCCATGCACCAAAGTCAACATACTCCCCACTTTGCTCACAATCATCAATGTGGTCAACCTTCCCAGTTACAGGATATTTCTCATACTCATCATTCTCCAACAATGTCACAACACATAGCTTGCTTACAACCTCTTTCAGGTGGTCATGTTGGTGGGCGCTTGCATCATGGGCTGCCATCCAGTCCTGCCAAGTTCTGTGATGAATGTGGAGCTCCATATTTAAGAGAAACCTCTAAGTTCTGCTCAGAATGCGGTGTCAAGAGGTTCTTGCCTGTGATCAAAGCAAGATATGATTATGGAGTGTTGATGTTCATAGTGACTTTCACTATAGTTTCGATTTCGGGTTATCAAGTCGATAACTTCTTTACGTTGGCTTATCAGAGACTGTCTTCTGTTCTTGCTGGTGGAGCTATCTGCATTATCATCTGCATGGTTGTTTGCCCTGTTTGGGATGGTGAAACTCTTCACGATGCTGATTTGGTGAGGAATATTTTTATTGTTCATGAAGATGAAGAAGAAAAGCATGTTACTGATACTAAAAAAGACAAATCATTCCTTCAAGAATACAAAGTTGTCCTTGATTCTAGTACCACAGAAGAATCCTTGGCAAACTTTGGAAGATGGGAACCAAAACATGGAAAGTTTGGCTTTCATCACCCATGGAAACACTACTTGAAAATTGGATCCCTTGCTCGACAATGTGCCTATGGGATTGAAGCTCTCAATGGCTATCTTTCCCCTGAAAATAATTGTTATTGCAATTTGGAAGAACAACTGAAGTTCTATGCAAGAACTTAA 2373 41.89 MPFSNHQSSINLCKHMVTYGMGEVIMKIYLIPWDWSFCQEIFLGWQNSCETQNIPLMISFSQFYECTKSTNNIVRRRRPRTSLFPCLAVLIDQANEPESHLKSSKPTVINLVTCRVHQTIVVLWWIELNRLTSVPWVLSLWLGELLYSFSSVGPFGQKNTKVLQLFIEGLWGSFWLRSYSSLEFGSHFRSRSVGNKTRYGCLRAELRWLVWERAYFGTSIVEAIHVDGCHIGISSLPIHTVGVEEDRSSLENSGSSRLSYDSLTVEDISPIEAARARFLQIIVDHFIDDHVLEVTETDNDYISQSGQDKLTKRKTKEVQYEGDPKFVLPLMYVANMYETLVNDANIRLASLSGIRDKTIGVALEAAGGLYRKLAQKFPKKGPCTYKRRELATSLETRTRFPELVVQEEKRVRFVVVNGLDIVEKPNGMPIEDAEWFRRLTGRNEVAVSAQDYKFYSPRHKYRRVAANSVSSISSLNTFSSGDNSSTLTSGQAFRSPGEQQTPCKHHIQQLPHQPQFQSIHQNHHQSMHQSQHTPHFAHNHQCGQPSQLQDISHTHHSPTMSQHIACLQPLSGGHVGGRLHHGLPSSPAKFCDECGAPYLRETSKFCSECGVKRFLPVIKARYDYGVLMFIVTFTIVSISGYQVDNFFTLAYQRLSSVLAGGAICIIICMVVCPVWDGETLHDADLVRNIFIVHEDEEEKHVTDTKKDKSFLQEYKVVLDSSTTEESLANFGRWEPKHGKFGFHHPWKHYLKIGSLARQCAYGIEALNGYLSPENNCYCNLEEQLKFYART 790
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 36653452 36668500 + CrPI670011_09g018280.1 Cre09g1828 508496

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g1828 790 MobiDBLite consensus disorder prediction 535 554 - -
Cre09g1828 790 MobiDBLite consensus disorder prediction 479 505 - -
Cre09g1828 790 Pfam Aluminium activated malate transporter 612 784 IPR020966 GO:0015743(InterPro)
Cre09g1828 790 PANTHER ALUMINUM-ACTIVATED MALATE TRANSPORTER 10 613 774 - GO:0009705(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g1828 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre09g1172 Cre-Chr9:13414703 Cre09g1828 Cre-Chr9:36653452 5.20E-29 dispersed
Cre09g1828 Cre-Chr9:36653452 Cre10g1947 Cre-Chr10:34218494 1.90E-56 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1081 . . Bda01g01780 . . . . . . . . . . . . . Cpe01g01879 . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe02g01958 . . . Cmo04g02266 . Cma04g02167 . Car04g02098 . . . Bhi12g01010 . . . . . . Cla01g00686 Cam01g0717 Cec01g0710 Cco01g0740 Clacu01g0704 Cmu01g0676 Cre09g1828 Lsi09g00745 Csa05g01320 Chy09g00449 Cme09g01254
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011867 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 0 1 1 1 30