Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g1837 ATGGTTTTGTCCAAAACTTTCTCTGAATCCGATGTTTCCATACATTCCACATTTGCCTCTCGCTACGTTCGGGACTCTGCTCCAAGGTTCACCATGCCCGACAACTCCATGCCCAAGGAGGCCGCCTTCCAAATCATCAACGACGAGCTCATGCTGGACGGCAACCCAAGGCTGAATCTAGCCTCCTTCGTCACTACTTGGATGGAGCCCGAATGCGATAAGCTCATCATGGACTCTGTCAACAAGAACTACGTGGACATGGACGAGTACCCTGTCACCACCGAGCTTCAGAACCGCTGCGTCAACATGATTGCCCATCTCTTCAACGCCCCCTTGGGAGACTCCGACACCGCCGTCGGAGTTGGGACGGTGGGGTCGTCGGAGGCCATCATGCTGGCGGGGCTTGCCTTCAAGAGGAAGTGGCAGAACAGGCGGAAAGCAGAGGGGAAGGCTTATGAGAAGCCCAATATTGTGACGGGTGCCAATGTGCAAGTTTGTTGGGAGAAATTTGCGAGATACTTTGAAGTTGAGCTGAAGGAAGTTAAGGTGAGAGAAGGGTATTACGTGATGGACCCTGTTCAAGCGGTTGAGATGGTGGATGAGAATACCATCTGCGTTGCAGCCATTTTGGGGTCAACTTACAATGGTGAATTCGAAGATGTGAAGCTGTTGAATGATTTGTTGGTGGAGAAGAATAAGGAAACTGGATGGGATACTCCCATTCACGTGGATGCGGCCAGCGGTGGGTTCATAGCGCCGTTTCTGTATCCAGAGCTTGAATGGGACTTCAGGCTTCCTCTGGTGGAGAGCATCAATGTGAGCGGCCATAAGTATGGGCTTGTCTACGCTGGAATTGGTTGGGTGATTTGGAGAACCAAACAAGATCTCCCCCAAGAACTCATTTTCCATATCAATTACCTTGGAGCGGACCAACCCACCTTCACTCTCAACTTCTCCAAAGGGTCAAGCCAAATCATTGCGCAGTATTACCAACTAATCCGATTGGGTTTCGAGGGATATCGGAATGTGATGCAAAATTGTCACGACAATGCAATGGTGCTTAAGGAAGGGCTTGAAACCACAGGGAGGTTCACCATAGTTTCAAAGGACATGGGAGTGCCCGTGGTGGCGTTCTCCCTCAAAGACCGAACCCGGCACGACGAGTTTGAGGTATCAGAGATGTTGCGGCGGTTTGGGTGGATCGTGCCGGCGTATCCAATGCCAGAAGGGGCGAAACACGTATCAGTTCTTCGTGTGGTGATAAGAGAAGATTTCTCTCGCACGCTTGCAGAGCGGCTTGTGCTTGATATTGTAAAGGTTTTGGCTGAGCTAGATACTCTTCCACCAAAGAATGGTGGAAATGAAACAGGTGGAAAGAAGAGGGTAGAGGAAACAGAGAGGGAAATAGCAACTTATTGGAGGAATATAACGAAGGCTAGGAAAATCAAGCTTGCTGCTAATCAAGATGGTCCTTCAGTTACCGTCATTGCCAAATAA 1497 49.77 MVLSKTFSESDVSIHSTFASRYVRDSAPRFTMPDNSMPKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMDSVNKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLGDSDTAVGVGTVGSSEAIMLAGLAFKRKWQNRRKAEGKAYEKPNIVTGANVQVCWEKFARYFEVELKEVKVREGYYVMDPVQAVEMVDENTICVAAILGSTYNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVESINVSGHKYGLVYAGIGWVIWRTKQDLPQELIFHINYLGADQPTFTLNFSKGSSQIIAQYYQLIRLGFEGYRNVMQNCHDNAMVLKEGLETTGRFTIVSKDMGVPVVAFSLKDRTRHDEFEVSEMLRRFGWIVPAYPMPEGAKHVSVLRVVIREDFSRTLAERLVLDIVKVLAELDTLPPKNGGNETGGKKRVEETEREIATYWRNITKARKIKLAANQDGPSVTVIAK 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 36730179 36731764 - CrPI670011_09g018370.1 Cre09g1837 508505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g1837 498 Gene3D - 361 448 - -
Cre09g1837 498 Gene3D - 66 360 IPR015421 -
Cre09g1837 498 PANTHER GLUTAMATE DECARBOXYLASE 1 481 IPR010107 GO:0004351(PANTHER)|GO:0004351(InterPro)|GO:0005829(PANTHER)|GO:0006536(InterPro)|GO:0006538(PANTHER)|GO:0030170(InterPro)
Cre09g1837 498 CDD DOPA_deC_like 59 439 - -
Cre09g1837 498 FunFam Glutamate decarboxylase 1 65 - -
Cre09g1837 498 FunFam Glutamate decarboxylase 361 448 - -
Cre09g1837 498 SUPERFAMILY PLP-dependent transferases 16 444 IPR015424 -
Cre09g1837 498 Pfam Pyridoxal-dependent decarboxylase conserved domain 33 381 IPR002129 GO:0016830(InterPro)|GO:0019752(InterPro)|GO:0030170(InterPro)
Cre09g1837 498 NCBIfam glutamate decarboxylase 16 444 IPR010107 GO:0004351(InterPro)|GO:0006536(InterPro)|GO:0030170(InterPro)
Cre09g1837 498 Gene3D - 1 65 - -
Cre09g1837 498 FunFam Glutamate decarboxylase 66 360 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1601 Cre-Chr1:29070508 Cre09g1837 Cre-Chr9:36730179 2.70E-217 dispersed
Cre09g1679 Cre-Chr9:34553133 Cre09g1837 Cre-Chr9:36730179 8.10E-192 dispersed
Cre09g1680 Cre-Chr9:34561921 Cre09g1837 Cre-Chr9:36730179 1.40E-45 dispersed
Cre09g1837 Cre-Chr9:36730179 Cre09g1839 Cre-Chr9:36744191 3.70E-255 dispersed
Cre09g1837 Cre-Chr9:36730179 Cre09g1838 Cre-Chr9:36734398 7.50E-22 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g1837 K01580 - csv:101208026 959.133