Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g1839 ATGGTTTTGTCCAAAACTTTCTCTGAATCCGATGTTTCCATACATTCCACATTTGCCTCTCGCTACGTTCGGGACTCTGCTCCAAGGTTCACCATGCCCGACAACTCCATGCCCAAGGAGGCCGCCTTCCAAATCATCAACGACGAGCTCATGCTGGACGGCAACCCAAGGCTGAATCTAGCCTCCTTCGTCACTACTTGGATGGAGCCCGAATGCGATAAGCTCATCATGGACTCTGTCAACAAGAACTACGTGGACATGGACGAGTACCCTGTCACCACCGAGCTTCAGAACCGCTGCGTCAACATGATTGCCCATCTCTTCAACGCCCCCTTGGGAGACTCCGACACCGCCGTCGGAGTTGGGACGGTGGGGTCGTCGGAGGCCATCATGCTGGCGGGGCTTGCCTTCAAGAGGAAGTGGCAGAACAGGCGGAAAGCAGAGGGGAAGGCTTATGAGAAGCCCAATATTGTGACGGGTGCCAATGTGCAAGTTTGTTGGGAGAAATTTGCGAGATACTTTGAAGTTGAGCTGAAGGAAGTTAAGGTGAGAGAAGGGTATTACGTGATGGACCCTGTTCAAGCGGTTGAGATGGTGGATGAGAATACCATCTGCGTTGCAGCCATTTTGGGGTCAACTTACAATGGTGAATTCGAAGATGTGAAGCTGTTGAATGATTTGTTGGTGGAGAAGAATAAGGAAACTGGATGGGATACTCCCATTCACGTGGATGCGGCCAGCGGTGGGTTCATAGCGCCGTTTCTGTATCCAGAGCTTGAATGGGACTTCAGGCTTCCTCTGGTGGAGAGCATCAATGTGAGCGGCCATAAGTATGGGCTTGTCTACGCTGGAATTGGTTGGGTGATTTGGAGAACCAAACAAGATCTCCCCCAAGAACTCATTTTCCATATCAATTACCTTGGAGCGGACCAACCCACCTTCACTCTCAACTTCTCCAAAGGGAGGTTCACCATAGTTTCAAAGGACATGGGAGTGCCCGTGGTGGCGTTCTCCCTCAAAGACCGAACCCGGCACGACGAGTTTGAGGTATCAGAGATGTTGCGGCGGTTTGGGTGGATCGTGCCGGCGTATCCAATGCCAGAAGGGGCGAAACACGTATCAGTTCTTCGTGTGGTGATAAGAGAAGATTTCTCTCGCACGCTTGCAGAGCGGCTTGTGCTTGATATTGTAAAGGTTTTGGCTGAGCTAGATACTCTTCCACCAAAGAATAGTGCAAAAATGGGGAGCTTAGAAAATGGTAAGAAGGAAACAAGTGGGAAGAAGACGGCAGAGGAAACAGGGAGGGAAATAGCGACTTATTGGAGGAATATAACAAAGGCTAGGAAAATCAAGCTTGCTGCTAATCTGGATAGTCCTTCGATTACAGTAGTTGCCAAATAA 1401 50.04 MVLSKTFSESDVSIHSTFASRYVRDSAPRFTMPDNSMPKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMDSVNKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLGDSDTAVGVGTVGSSEAIMLAGLAFKRKWQNRRKAEGKAYEKPNIVTGANVQVCWEKFARYFEVELKEVKVREGYYVMDPVQAVEMVDENTICVAAILGSTYNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVESINVSGHKYGLVYAGIGWVIWRTKQDLPQELIFHINYLGADQPTFTLNFSKGRFTIVSKDMGVPVVAFSLKDRTRHDEFEVSEMLRRFGWIVPAYPMPEGAKHVSVLRVVIREDFSRTLAERLVLDIVKVLAELDTLPPKNSAKMGSLENGKKETSGKKTAEETGREIATYWRNITKARKIKLAANLDSPSITVVAK 466
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 36744191 36745789 + CrPI670011_09g018390.1 Cre09g1839 508507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g1839 466 PANTHER GLUTAMATE DECARBOXYLASE 1 321 IPR010107 GO:0004351(PANTHER)|GO:0004351(InterPro)|GO:0005829(PANTHER)|GO:0006536(InterPro)|GO:0006538(PANTHER)|GO:0030170(InterPro)
Cre09g1839 466 SUPERFAMILY PLP-dependent transferases 16 403 IPR015424 -
Cre09g1839 466 MobiDBLite consensus disorder prediction 411 432 - -
Cre09g1839 466 FunFam Glutamate decarboxylase 66 340 - -
Cre09g1839 466 Gene3D - 325 407 - -
Cre09g1839 466 FunFam Glutamate decarboxylase 320 407 - -
Cre09g1839 466 FunFam Glutamate decarboxylase 1 65 - -
Cre09g1839 466 Gene3D - 70 324 IPR015421 -
Cre09g1839 466 NCBIfam glutamate decarboxylase 16 327 IPR010107 GO:0004351(InterPro)|GO:0006536(InterPro)|GO:0030170(InterPro)
Cre09g1839 466 Pfam Pyridoxal-dependent decarboxylase conserved domain 33 326 IPR002129 GO:0016830(InterPro)|GO:0019752(InterPro)|GO:0030170(InterPro)
Cre09g1839 466 Gene3D - 1 65 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre09g1837 Cre-Chr9:36730179 Cre09g1839 Cre-Chr9:36744191 3.70E-255 dispersed
Cre09g1838 Cre-Chr9:36734398 Cre09g1839 Cre-Chr9:36744191 2.40E-22 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g1839 K01580 - csv:101208026 879.396