Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre09g1848 | ATGTTGAAACCTTCAACTTCTTCTTCTTCTGGTGGTCTTCCTCTTCCTCCTCCTCTTCCTCCTCCCAATTCTGACCATGCCATCACCAGCAAAAGAAAAAGAAGACCCGCAGGAACTCCAGATCCGGATGCGGAAGTGGTTTCTTTATCCCCAAAAACGCTTCTTGAATCGGATCGGTATGTTTGTGAGATATGCAACCAAGGGTTTCAAAGGGATCAGAATCTTCAGATGCACCGGCGCCGCCACAAAGTGCCTTGGAAGTTACTAAAGAGAGCGGAGACGGCGGAGAGTGTGAAGAAAAAGGTGTTTGTTTGTCCGGAGCCGACGTGTCTTCACCATGACCCTTGCCATGCTCTTGGTGATCTCGTCGGTATAAAAAAGCACTTCCGGAGAAAGCATAGCAACCAAAAGCAGTGGGTTTGTGACAAGTGCTCTAAGGCTTATGCTGTTCATTCTGATTTCAAAGCTCACCTCAAAACTTGTGGCACTCGTGGCCACTCTTGTGATTGTGGTCGTGTCTTTTCCAGAGTGGAGAGCTTTATAGAGCACCAAGACACTTGCAATCTCCGCCAGATGAGGTCCGATCAGTTGCAACCAGTGGTGCCGCCGTTACCACCACCGCTGTTATTGCAACCCTACTCACGATCAGTTTCTTACACCGGCGCTTCCACCAGCAACGATCATAGCTTTCAAATGGCTACTCCATTACGAGGGTTTCCAATCTTATCATCAAACTCGGATCGAAACATCAACATTAATTTACCCGATCACCACGATCTCGAACTTCATCTCTCTTCTCCGAGCTCAGCCTTTCTAAAGCTCTCAATTGGGTCCAACAAGGAGCCGAATGACGAGCGTCAACTCGAGCTGGCGATAGCGGAGAAGGCGTACGCAGACGAAGCAAGACGAGAGGCGAAACGACAGATCGAAATTGCCGAAGTCGAGTTTGCAAATGCCAAAATGATACGACAGCAAGCTCAAGCGGAGTTGGAGAAAGCAAGGATCTTGAAGGAAGAAGCTAGCCGGAAAATGAGCTCCACTATTATGGAAATCACTTGCCAAACTTGCCGGTTGCACTTTCACATGAGTTCGGCCGCTCCTGAAGAGACCTCACTCGCCATCAGCTACATGTCGTCTGCTACGACAGAAGGTGACGGAGAATGA | 1164 | 48.88 | MLKPSTSSSSGGLPLPPPLPPPNSDHAITSKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRAETAESVKKKVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNQKQWVCDKCSKAYAVHSDFKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDTCNLRQMRSDQLQPVVPPLPPPLLLQPYSRSVSYTGASTSNDHSFQMATPLRGFPILSSNSDRNININLPDHHDLELHLSSPSSAFLKLSIGSNKEPNDERQLELAIAEKAYADEARREAKRQIEIAEVEFANAKMIRQQAQAELEKARILKEEASRKMSSTIMEITCQTCRLHFHMSSAAPEETSLAISYMSSATTEGDGE | 387 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 36885334 | 36887130 | - | CrPI670011_09g018480.1 | Cre09g1848 | 508516 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre09g1848 | 387 | FunFam | protein indeterminate-domain 12-like | 39 | 109 | - | - | |
Cre09g1848 | 387 | SMART | c2h2final6 | 103 | 133 | IPR013087 | - | |
Cre09g1848 | 387 | SMART | c2h2final6 | 60 | 82 | IPR013087 | - | |
Cre09g1848 | 387 | SMART | c2h2final6 | 139 | 166 | IPR013087 | - | |
Cre09g1848 | 387 | Coils | Coil | 302 | 343 | - | - | |
Cre09g1848 | 387 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 60 | 82 | IPR013087 | - | |
Cre09g1848 | 387 | MobiDBLite | consensus disorder prediction | 1 | 46 | - | - | |
Cre09g1848 | 387 | Pfam | BIRD-IDD transcription factor, fourth C2HC zinc finger | 166 | 188 | - | - | |
Cre09g1848 | 387 | Gene3D | Classic Zinc Finger | 38 | 106 | - | - | |
Cre09g1848 | 387 | SUPERFAMILY | beta-beta-alpha zinc fingers | 59 | 159 | IPR036236 | - | |
Cre09g1848 | 387 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 23 | 341 | IPR031140 | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Cre09g1848 | 387 | Pfam | BIRD-IDD transcription factor, second C2H2 zinc finger | 99 | 133 | - | - | |
Cre09g1848 | 387 | Gene3D | Classic Zinc Finger | 124 | 199 | - | - | |
Cre09g1848 | 387 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 62 | 82 | IPR013087 | - | |
Cre09g1848 | 387 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 138 | 162 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre01g1606 | Cre-Chr1:29131245 | Cre09g1848 | Cre-Chr9:36885334 | 1.30E-92 | dispersed | |
Cre09g1848 | Cre-Chr9:36885334 | Cre10g2152 | Cre-Chr10:36064706 | 1.60E-59 | dispersed | |
Cre09g1848 | Cre-Chr9:36885334 | Cre01g1377 | Cre-Chr1:26983274 | 1.40E-95 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
54401 | None | None | None | None | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre09g1848 | K25871 | - | csv:101210468 | 677.552 |