Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g1861 ATGGGTATGAAAATGCAGCAGGGCAACAACGCTGTGGCTATGAAGTGTAACGAGCAAATGGGAACAACAAAGAAGGGTTACACATTTGTTGAAGCTAACAGGGCTTGGCTTAGAAAGTATCTTCTATTCTGGATTATGGGGATGGCGTTTATCAGCATGTTAATCTATAATGGCATGGATGCTGATAATAAAGTGAGGAGGAACGAAGTGTTGGGGAGCATGTGCGAGCAGAGAGCAAGGATGTTGCAGGATCAATTCAGTGTTAGTGTTAACCATGTTCATGCGTTGGCTGTCCTTGTTTCCACCTTTCATTACTTCAAAAACCCTTCTGCTATTGATCAGGAAACTTTTGCAGAATACACAGCCAGAACTGCTTTTGAACGGCCTCTACTCAGTGGGGTGGCGTATGCACAAAGAGTGATTCATTCAGAGAGGGATATCTTTGAAAAGCAACACGGGTGGATGATAAAAACAATGAAAAGAGAACCTTCGCCAATTCGAGATGAATATGCACCAGTAATATTTTCTCAAGAAACAGTCTCATATATTGAATCACTGGATATGATGTCAGGAGAGGAGGACCGTGAAAATATTTTGAGGGCTAGAGCAACAGGAAAGGCTGTTTTAACAAGCCCCTTCAGGCTGCTGGGTTCTCATCATCTTGGAGTTGTTTTGACGTTTCCCGTTTACAAGTCCAAATTGCCATCTAAACCAACCAAAGAAGATCGGATTGAAGCAACAGCAGGCTACGTTGGTGGAGCCTTTGATGTTGAGTCACTTGTGGAGAACTTGCTTGGGCAGCTTGCAGGGAATCAGGCCATTTTGGTGAACGTATATGATGTCACAAACTCTTCTGATCCCCTCGTCATGTATGGTCATCAATATCAAGATGGTGACTTGTCTCTTTTGCATGAGAGTAGCCTTGATTTTGGAGATCCATTCAGGAAGCATTTGATGATTTGTAGATATCAGCAGAGGGCTCCCACATCCTGGACTGCCCTGACTACAGCATTCTTATTCTTTGTGATCGGGTTGTTAGTTGGATATATTTTGTATGGTGCAGCAACTCACATTGTGAAGGTTGAAGATGATTTTCATGAGATGAAAAAACTGAAATTTCGCGCGGAGGCTGCTGATGTGGCAAAATCCCAGTTTCTTGCAACTGTTTCTCACGAAATTAGGACACCAATGAATGGCATCCTTGGAATGCTTGCTCTGCTTCTGGATACAGATTTAAGTTCTACACAGAAGGATTATGCTCAGACTGCTCAGGCTTGTGGAAAGGCACTGATAGCATTAATAAATGAGGTTCTTGACCGGGCCAAAATTGAAGCTGGAAAGTTAGAACTGGAAGCAGTTCCGTTTGACATTCGATCAATACTCGATGATGTGCTATCTTTATTTTCCGAGAAGTCCAGACAAAAGGGTCTGGAGCTGGCAGTTTTTGTTTCTGATAAAGTTCCAGAAATTGTTATTGGAGATCCTGGAAGATTCAGACAAATTATAACAAATCTTGTGGGTAACTCTGTTAAGTTTACTGAAAGGGGACATATATTTGTTAAAGTACACCTAGCTGAGCATTCTAAAGGCTCCATTGACTCAAAATATGTCAATGGAATATCTGACAGTGACTTATTCATATCGGGTGGTCGTGAATTTCAAACTTTGAGTGGATGTGAGGCAGCCGATGACCAGAACAGCTGGGATAACTTTAAACATCTGATTGCTGATGAGGACTTCCAGTTGAATGGCACTCCGAACAACATGGTAGTTTCCAAGGAGGGTTGTGGTCATGTTACTTTGATGGTAAGTGTGGAGGATACTGGAATTGGGATCCTCTTACATGCCCAAAATCGAGTTTTCATGCCTTTCATGCAAGCAGATAGCTCGACCTCCCGCAATTATGGGGGGACTGGTATTGGCTTGAGTATCAGCAAATGTTTAGTTGAACTAATGGGTGGTCAGATCAACTTCATAAGCCGGCCTCAGATTGGAAGCACGTTTTCCTTCACTGCTGTTCTAGGAAAATGTAAGAAGAATTCAATCAATGATATGAAAAAACCCAGCTCTGAAGAACTTCCCCCCAGTTTTAGAGGAATGAAAGCAATCATAGTTGACAGGAAACATGTTAGAGCTTCTGTGACCAGATATCATTTGAAGAGACTTGGTGTTATAGTTGAAGTCACCAGTAGCATCAACATGGCAGCTTCTTTATGCAGAGAAAATGGATCCACAGTGCCAGGAAACTCAATCCTTCCAGATATGATCTTAGTTGAAAAAGACACATTAAAGTCCGATGAGGAATGTGGGATCATTCATCAACTGAACTGGAAACTGAACGGGAGTTCGTTTAAGTTACCGAAGCTGATCCTTCTTGCTACAAATATTACCACTGCAGAACTAGACAAGGCAAGAACAGCAGGTTTTGCAGACACCGTGATCATGAAGCCGTTAAGGGCGAGTATGGTGGCTGCCTGTCTTCAACAAGTACTCGGGGTTAAGAATCAGAGACGGGGAAGGGGCCTACCGAACGGTTCTGCTTTCCTCCAGAGCCTTCTCTGTGGCAAGAGAATCTTAATTGTTGATGACAATAGAGTAAACCGTAGGGTCGCTGCAGGCGCTCTGAAGAAATTCGGTGCAGATGTTGAGTGTGCAGATAGCGGGAAAGCTGCCCTGAAGTTGCTTCAGCTACCGCACAATTTCGATGCTTGCTTCATGGATATTCAAATGCCTGAAATGGATGGGTTTGAGGCAACTCGTCTTATCAGGATGATGGAGAACAAGGCAAACGAAGGAGGACCGTCTGCAGCGGAAGGCAAGTGGCATATGCCGATATTAGCAATGACTGCAGATGTGATTCATGCTACGTATGATGAATGCCTGAAATGCGGAATGGATGGCTACGTGAAAAGAGCCGGAGGCAAAATCTCCATTGCAGACCTCTTTTATGGTGGGTTGGAAGTACCAGCAAGTTTTGACACCATTGCTGGTGCTAACTGTCTTCTTGCTTCGACGAGAGCGGTCGGGAATTCTTGA 3036 43.58 MGMKMQQGNNAVAMKCNEQMGTTKKGYTFVEANRAWLRKYLLFWIMGMAFISMLIYNGMDADNKVRRNEVLGSMCEQRARMLQDQFSVSVNHVHALAVLVSTFHYFKNPSAIDQETFAEYTARTAFERPLLSGVAYAQRVIHSERDIFEKQHGWMIKTMKREPSPIRDEYAPVIFSQETVSYIESLDMMSGEEDRENILRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPSKPTKEDRIEATAGYVGGAFDVESLVENLLGQLAGNQAILVNVYDVTNSSDPLVMYGHQYQDGDLSLLHESSLDFGDPFRKHLMICRYQQRAPTSWTALTTAFLFFVIGLLVGYILYGAATHIVKVEDDFHEMKKLKFRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQKDYAQTAQACGKALIALINEVLDRAKIEAGKLELEAVPFDIRSILDDVLSLFSEKSRQKGLELAVFVSDKVPEIVIGDPGRFRQIITNLVGNSVKFTERGHIFVKVHLAEHSKGSIDSKYVNGISDSDLFISGGREFQTLSGCEAADDQNSWDNFKHLIADEDFQLNGTPNNMVVSKEGCGHVTLMVSVEDTGIGILLHAQNRVFMPFMQADSSTSRNYGGTGIGLSISKCLVELMGGQINFISRPQIGSTFSFTAVLGKCKKNSINDMKKPSSEELPPSFRGMKAIIVDRKHVRASVTRYHLKRLGVIVEVTSSINMAASLCRENGSTVPGNSILPDMILVEKDTLKSDEECGIIHQLNWKLNGSSFKLPKLILLATNITTAELDKARTAGFADTVIMKPLRASMVAACLQQVLGVKNQRRGRGLPNGSAFLQSLLCGKRILIVDDNRVNRRVAAGALKKFGADVECADSGKAALKLLQLPHNFDACFMDIQMPEMDGFEATRLIRMMENKANEGGPSAAEGKWHMPILAMTADVIHATYDECLKCGMDGYVKRAGGKISIADLFYGGLEVPASFDTIAGANCLLASTRAVGNS 1011
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 37119572 37125906 + CrPI670011_09g018610.1 Cre09g1861 508529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g1861 1011 Gene3D - 59 111 - -
Cre09g1861 1011 Pfam CHASE domain 111 291 IPR006189 -
Cre09g1861 1011 ProSiteProfiles Response regulatory domain profile. 857 986 IPR001789 GO:0000160(InterPro)
Cre09g1861 1011 Gene3D - 848 978 - -
Cre09g1861 1011 CDD HisKA 381 442 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cre09g1861 1011 SUPERFAMILY CheY-like 855 969 IPR011006 -
Cre09g1861 1011 ProSiteProfiles Histidine kinase domain profile. 388 676 IPR005467 -
Cre09g1861 1011 PANTHER TWO-COMPONENT HISTIDINE KINASE 33 969 IPR050956 -
Cre09g1861 1011 CDD REC_hyHK_CKI1_RcsC-like 858 969 - -
Cre09g1861 1011 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 599 671 IPR003594 -
Cre09g1861 1011 Gene3D - 445 679 IPR036890 -
Cre09g1861 1011 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 367 447 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Cre09g1861 1011 ProSiteProfiles Response regulatory domain profile. 701 831 IPR001789 GO:0000160(InterPro)
Cre09g1861 1011 ProSiteProfiles CHASE domain profile. 108 320 IPR006189 -
Cre09g1861 1011 Pfam His Kinase A (phospho-acceptor) domain 381 446 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cre09g1861 1011 SMART REC_2 856 982 IPR001789 GO:0000160(InterPro)
Cre09g1861 1011 Coils Coil 431 451 - -
Cre09g1861 1011 SMART CHASE_2 108 293 IPR006189 -
Cre09g1861 1011 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 435 671 IPR036890 -
Cre09g1861 1011 Gene3D CHASE domain 112 327 IPR042240 -
Cre09g1861 1011 FunFam Histidine kinase 4 112 327 - -
Cre09g1861 1011 CDD HATPase_EvgS-ArcB-TorS-like 498 674 - -
Cre09g1861 1011 Gene3D - 354 444 - -
Cre09g1861 1011 SUPERFAMILY CheY-like 696 833 IPR011006 -
Cre09g1861 1011 SMART HisKA_10 381 446 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cre09g1861 1011 FunFam Histidine kinase 4 353 444 - -
Cre09g1861 1011 Pfam Response regulator receiver domain 858 970 IPR001789 GO:0000160(InterPro)
Cre09g1861 1011 SMART HKATPase_4 493 676 IPR003594 -
Cre09g1861 1011 PRINTS Bacterial sensor protein C-terminal signature 601 615 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cre09g1861 1011 PRINTS Bacterial sensor protein C-terminal signature 619 629 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cre09g1861 1011 PRINTS Bacterial sensor protein C-terminal signature 660 673 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cre09g1861 1011 PRINTS Bacterial sensor protein C-terminal signature 636 654 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre09g1861 Cre-Chr9:37119572 Cre11g0603 Cre-Chr11:3144989 0.00E+00 dispersed
Cre09g1861 Cre-Chr9:37119572 Cre02g0608 Cre-Chr2:3057570 2.00E-276 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54404 PF02518 HATPase_c 2.10E-31 CL0025 Cre TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g1861 K14489 - csv:101209777 1830.07