Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g1874 ATGTCTTCCCCATCCTTTCCTCCTTCCATGGAGCCTCCCGCCCAACAGATCCCTCTCTTACCTTCCCGTCAGCCCTCCAACTCTGACGGCTCCACTTCCCCCATCGGCCCCCTCGCCCTTCTCTTGGGCCGCGCCACTGGCCGCCGTGGAACTTCTATGCTGGTTCGGGAGACGGCGGCACGTGAACTTGAAGAGCGCCGCATCGATTGGGGCTATTCCAAGCCTGTGGTAGCCCTTGACATTACGTGGAATTTAGCTTTTGTTTTCGTTTCGCTGGGTGTGCTTATTCACTCCGCCGATGAAAAACCCAATACGCCAATTCGGCTTTGGATGGTTGTTTATGCGGCTCAGTGCTTGGTGCACGCTGTGCTTGTGTGGTTTGAATTCAGAAGGAGGAATGCGAGGACGGCTAGGGATATGGACACGCAGCAACATCAGCAGTCTGATGGATATGTAACTAATGAAAGCGATGAAGAAGATGGTAGCCCCAGGAACATGTCCGGTGTTGTGAAAAGATGCGAGTCAGTAAACACTCTGGTATCGTTAATTTGGTGGCTGTTTGGCTTTTACTGGGTTGTGGCTGGTGGTAACATCCTCATGCAGAATGCCCCATCTTTATACTGGCTGGCTGTCGTATTCCTGGCATTTGATGTGTTCTTTGCAGTCTTTTGTGTTGTTTTGGCATGTTTGATAGGAATTGCTCTCTGTTGCTGCTTGCCTTGCATTATAGCTATTCTTTATGCTGTTGCAGGCCAGGAAGGTGCAACCGATGCTGATTTAAGTATGCTTCCTAGATATCGGTATCAAGTGTCCAATGAGCCTTCTCCGGGGGATGGGTTGATGGTTCCAGTAGAAACTAGCAGTAGATACTTGACGACTGAGCGTGTTCTATCACGCGAGGATGCGGAGTGCTGTATATGTCTTAGTCCATACGAGGATGGAGCCGAGCTTCATGCTCTTCCCTGCAATCACCATTTTCATTATGCGTGTATCACAAAATGGCTGAAGATGAATGCAACATGTCCTCTGTGCAAGTACAATATTCTAAAAAATTCTGAGCCTGTGTAA 1068 49.25 MSSPSFPPSMEPPAQQIPLLPSRQPSNSDGSTSPIGPLALLLGRATGRRGTSMLVRETAARELEERRIDWGYSKPVVALDITWNLAFVFVSLGVLIHSADEKPNTPIRLWMVVYAAQCLVHAVLVWFEFRRRNARTARDMDTQQHQQSDGYVTNESDEEDGSPRNMSGVVKRCESVNTLVSLIWWLFGFYWVVAGGNILMQNAPSLYWLAVVFLAFDVFFAVFCVVLACLIGIALCCCLPCIIAILYAVAGQEGATDADLSMLPRYRYQVSNEPSPGDGLMVPVETSSRYLTTERVLSREDAECCICLSPYEDGAELHALPCNHHFHYACITKWLKMNATCPLCKYNILKNSEPV 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 37331551 37335346 + CrPI670011_09g018740.1 Cre09g1874 508542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g1874 355 Pfam Ring finger domain 303 345 IPR001841 -
Cre09g1874 355 SUPERFAMILY RING/U-box 291 350 - -
Cre09g1874 355 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 251 350 IPR013083 -
Cre09g1874 355 ProSiteProfiles Zinc finger RING-type profile. 304 345 IPR001841 -
Cre09g1874 355 SMART ring_2 304 344 IPR001841 -
Cre09g1874 355 MobiDBLite consensus disorder prediction 1 32 - -
Cre09g1874 355 FunFam E3 ubiquitin protein ligase RIE1 284 352 - -
Cre09g1874 355 PANTHER TARGET OF ERK KINASE MPK-1 43 349 - GO:0000325(PANTHER)|GO:0006511(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
Cre09g1874 355 MobiDBLite consensus disorder prediction 138 165 - -
Cre09g1874 355 CDD RING-H2_PA-TM-RING 303 345 - -
Cre09g1874 355 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g1229 Cre-Chr8:25500876 Cre09g1874 Cre-Chr9:37331551 3.60E-33 dispersed
Cre09g1874 Cre-Chr9:37331551 Cre10g0593 Cre-Chr10:5431818 1.50E-72 dispersed
Cre09g1874 Cre-Chr9:37331551 Cre07g1863 Cre-Chr7:34022566 6.80E-09 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g1874 - - - 0.0