Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g1883 ATGGGAGACGTGAAGGACAAGGTCAAGGGTTTCATGAAAAGGTTTAATAATACGTTGTCCTCATCTTCTTCTTCGTCAAGTTTCAAGGGCCAGGGAAGAGTTTTAGGATCGTCTTCTTCTGGGTCGACTAGTTCTATGCCTACCCGCCCATCGCGGAATCCCATTTCAAAGCCGAACCCGGTTAATCCACCTTCAGATTCTAAGCGCCCGCTTGTGAATTCGATTGCCAATGGTCAAAACAGGTCAGACCTGTCGAATAAATCGAACCCAGATCGTAAACCGGCCGATGGATTTGACCCATTTGACTCGTTTATAACATCTGGGAAAAGATCTGGAAATGGGTATTCCTTAAATGTGTTTGAATGTCCGATTTGTGGCCAAAGTTACAGGTCTGAAGAAGAGGTTTCGGTGCACGCAGATAGCTGTGTCAACGATAGTACAGCCAAGGGAGCTGAAGATCCACCTACGAGTGATGCAGAATCTCGGAGTGAATTGGAGGCTTGTGTTGCCACTTTCTTATCCGGGAAGCCATCACAAGGTTCATTGGATATTGTTCTGAAGCTTTTGAGGAACATAATTCGGGAACCAGAGAATTCAAAGTTTAGGAAAATTCGTCTGAGTAATCCCAAAATTAAGGAGGCAATTGGTGAGGCTGTGGGGGGAGTGGAATTGTTGGAGTTTGTAGGTTTTAAATTGCAAGAGGAAGATGGTGAAATGTGGGCAATCATGGACGTTCCTACAGAGGAAGAAATTAACCTATTAAGTAAGGTAATAGATTCGATTGACCGGCCAAAGCTTGATGAACAGCAAAAGAAAGCCAGCACTGCATCTGCACTGATTGAACCAAAGAAGGTAGACAGACAGATTCGGGTATTCTTTGCTGTCCCTGAAAACGTTGCAGCCAACATTGAACTACCAGACTCCTTCTACAAACTCTCTGTTGAAGAGGTTAAAAGAGAAGCTATAATGAGGAAGCAAAAGATTGCTGAATCTCAGCTTTTGGTTCCCAAATCATACAAGGAAAAACAGGCAAAAGCTGCTAGGAGGAAGTACACAAGAACAGTTATCAGAATTCAATTTCCCGACGGCGTGGTACTTCAAGGTGTTTTTTCTCCTTGGGAACCGACAATTGCGCTATATGAGTTTGTGAGCACAGCACTGAAAGAACCCGGCTTGGAATTCGAGTTGATACATCCCGTCGGTGTTAAGCGGCGTACAATCGCTCATTTTCCCGCAGAAGGAGAGAGATCTAAAACACTAGATGATGAGGAGTTAGTTCCTTCAGCTCTGGTCAAGTTTAGACCAATTGAAACAGATTCAGTTGTCTTCACAGGTTTGCGTAACGAACTCCTTGAGATAATCGAACCACTCGTTGGCGGTTCAGCCGTGGCTCCTCCTGCAGTTTAA 1407 44.49 MGDVKDKVKGFMKRFNNTLSSSSSSSSFKGQGRVLGSSSSGSTSSMPTRPSRNPISKPNPVNPPSDSKRPLVNSIANGQNRSDLSNKSNPDRKPADGFDPFDSFITSGKRSGNGYSLNVFECPICGQSYRSEEEVSVHADSCVNDSTAKGAEDPPTSDAESRSELEACVATFLSGKPSQGSLDIVLKLLRNIIREPENSKFRKIRLSNPKIKEAIGEAVGGVELLEFVGFKLQEEDGEMWAIMDVPTEEEINLLSKVIDSIDRPKLDEQQKKASTASALIEPKKVDRQIRVFFAVPENVAANIELPDSFYKLSVEEVKREAIMRKQKIAESQLLVPKSYKEKQAKAARRKYTRTVIRIQFPDGVVLQGVFSPWEPTIALYEFVSTALKEPGLEFELIHPVGVKRRTIAHFPAEGERSKTLDDEELVPSALVKFRPIETDSVVFTGLRNELLEIIEPLVGGSAVAPPAV 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 37427146 37430822 + CrPI670011_09g018830.1 Cre09g1883 508551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g1883 468 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 1 458 - GO:0050832(PANTHER)
Cre09g1883 468 FunFam UBX domain-containing protein 6 343 434 - -
Cre09g1883 468 Gene3D - 343 435 - -
Cre09g1883 468 SMART PGNneu 180 247 - -
Cre09g1883 468 SMART ubx_3 346 435 IPR001012 GO:0005515(InterPro)
Cre09g1883 468 Pfam UBX domain 350 430 IPR001012 GO:0005515(InterPro)
Cre09g1883 468 SUPERFAMILY Ubiquitin-like 320 433 IPR029071 -
Cre09g1883 468 MobiDBLite consensus disorder prediction 15 101 - -
Cre09g1883 468 MobiDBLite consensus disorder prediction 66 85 - -
Cre09g1883 468 ProSiteProfiles UBX domain profile. 349 433 IPR001012 GO:0005515(InterPro)
Cre09g1883 468 MobiDBLite consensus disorder prediction 15 52 - -
Cre09g1883 468 Gene3D - 174 263 - -
Cre09g1883 468 CDD PUB 167 263 - -
Cre09g1883 468 Pfam PUB domain 179 249 IPR018997 -
Cre09g1883 468 SUPERFAMILY PUG domain-like 177 241 IPR036339 -
Cre09g1883 468 CDD UBX_UBXN6 354 434 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre09g1883 Cre-Chr9:37427146 Cre11g1683 Cre-Chr11:28211168 1.10E-06 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54407 PF00789 UBX 3.00E-05 CL0072 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g1883 K14011 - csv:101209321 815.839