Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g1886 ATGGATGGAGCGGAAATGGAGCTTGAGCGACGGAGCAAGTTTCTGAATGGGCTTATTTTGAAGAAGAAGGCAGGGGAGCAGCAAGAGCAGCGCGATCGTCTCAATGTTCGTGTTAGAGCCTCCGATATGCCGTTTCCTCTGCAGAATCGTGCTTTTAGTTGCGCTCGTGAACTGCTCGATTCGATGCCTGGGAAGCTCGATAGCAAACGCCTTGCTCTTGCCCTTAAAAAGGAATTTGATTCCTCCTATGGTCCGGCTTGGCACTGCATCGTGGGAACTAGCTTTGGGTCCTATGTAACACATTCTCTGGACCAGAATCGTCCTCCTCCATCCGAAGCTAAGGAATTGGGTGTTTCCCTCACATCGGCGGTAGAGAAGGAAGACGGAGAACTTACTGACATGTCTGAGAATCAGGAACCACCAAATCCGGCGGCTACCGCTGGGAGTTCGTCTTCCGGCGTTCGAATGGAAGCAGGGCCACCGCACGAGGCGTTATTTCTTGTACTGAGTTATCTTCCTCTCTTTGAGCTTCTTTCCATGAGGGCAGTGTGCGTATCGCTGAGAGACGCAGTGGAACATGATGTGTTGCCGTGGCTTCACATCGTCGTCGATCGGCGTTTGAGCTCCCGGCTATCCGATTACACTCTGGGGAGAATCGCCAGGAAGGCCGGTGGTCGCCTTAGAACTTTGGCTTTGATCAATTGTTTCAAGATTTCAGATTCTGGACTTCACGAAGTTGTTGAGAAGAATCCTCTTCTCACCAAGCTTTATGTACCTGGATGCACGAGTTTGACTCCTGCGGGAGTGGTTAGGGCAGTGGAGACTTTATCTCAACATTCTCACAATTTGAAGAGCCTAATGATTGGTGGCATTTACAACATAGAGAACCAACACCTTGAAGTCCTCAAATGCCACCTTTTCAAGAACCGATCGCAGCAGCAGCAGCAGGAGCGGCAACACCACCACCTCTACCATGAGCACATTGATCGGTCGAAGTTGTTGTGTAATGAATTCCAGCCAGTGATTGATGTACAAATCTGCCCAAAATGCTATGACATAAGGAATGTTTATGATTGCTCAAGGGAGAGATGCAAGATAAAGCAAGAGGAGCAAACACTGGGCGATTGTCGGGGTTGCATTTGTTGCGTTCCAAGGTGTGAAGAATGCGGTGGATGTGTCGATGATGATGAAATGGAAGAGGCTGTATGTGCAGGTATCTTGTGTTCAAGTTGCTGGCTTCAACTTCCTAAATGCAACCATTGTAATAGGTCATATTGCACGCGACACCGTCATAATATTGAAACTAGAAGCCCTTGTTTGCATTTTTTGTATCTTGCAAAAGAACGTTGCAAGGCAGGGCTGCAACAAGATATGCTTTGTTTGAACAGGGAAAATGTAAAACTTGCTGAAAGAAAGGAAAATTATTCCATGCATTCTGGAACTTGGGCTACTACTTGGACTGTTTTTCTTTACATGCAGAAGTTTGTGTAA 1491 47.28 MDGAEMELERRSKFLNGLILKKKAGEQQEQRDRLNVRVRASDMPFPLQNRAFSCARELLDSMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLDQNRPPPSEAKELGVSLTSAVEKEDGELTDMSENQEPPNPAATAGSSSSGVRMEAGPPHEALFLVLSYLPLFELLSMRAVCVSLRDAVEHDVLPWLHIVVDRRLSSRLSDYTLGRIARKAGGRLRTLALINCFKISDSGLHEVVEKNPLLTKLYVPGCTSLTPAGVVRAVETLSQHSHNLKSLMIGGIYNIENQHLEVLKCHLFKNRSQQQQQERQHHHLYHEHIDRSKLLCNEFQPVIDVQICPKCYDIRNVYDCSRERCKIKQEEQTLGDCRGCICCVPRCEECGGCVDDDEMEEAVCAGILCSSCWLQLPKCNHCNRSYCTRHRHNIETRSPCLHFLYLAKERCKAGLQQDMLCLNRENVKLAERKENYSMHSGTWATTWTVFLYMQKFV 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 37486720 37493173 - CrPI670011_09g018860.1 Cre09g1886 508554

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g1886 496 Pfam F-box domain 161 194 IPR001810 GO:0005515(InterPro)
Cre09g1886 496 MobiDBLite consensus disorder prediction 135 153 - -
Cre09g1886 496 SUPERFAMILY RNI-like 226 303 - -
Cre09g1886 496 SMART Dynein_light_2 31 106 IPR001372 GO:0007017(InterPro)|GO:0030286(InterPro)
Cre09g1886 496 SUPERFAMILY F-box domain 161 196 IPR036047 GO:0005515(InterPro)
Cre09g1886 496 MobiDBLite consensus disorder prediction 127 156 - -
Cre09g1886 496 Gene3D Protein Inhibitor Of Neuronal Nitric Oxide Synthase; 24 106 IPR037177 GO:0007017(InterPro)|GO:0030286(InterPro)
Cre09g1886 496 Pfam Dynein light chain type 1 36 102 IPR001372 GO:0007017(InterPro)|GO:0030286(InterPro)
Cre09g1886 496 ProSitePatterns 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 376 387 IPR017900 -
Cre09g1886 496 PANTHER DYNEIN LIGHT CHAIN 35 103 IPR001372 GO:0005868(PANTHER)|GO:0007017(InterPro)|GO:0030286(InterPro)|GO:0045505(PANTHER)
Cre09g1886 496 Gene3D Ribonuclease Inhibitor 160 338 IPR032675 -
Cre09g1886 496 SUPERFAMILY DLC 29 104 IPR037177 GO:0007017(InterPro)|GO:0030286(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g1886 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2792 Cre-Chr5:38635799 Cre09g1886 Cre-Chr9:37486720 8.90E-41 dispersed
Cre06g2523 Cre-Chr6:32887390 Cre09g1886 Cre-Chr9:37486720 1.30E-16 dispersed
Cre09g1886 Cre-Chr9:37486720 Cre11g0775 Cre-Chr11:4950459 5.20E-15 dispersed
Cre09g1886 Cre-Chr9:37486720 Cre08g1673 Cre-Chr8:29188144 8.20E-45 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g477 Blo01g00768 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0378 Cone9ag0407 . . . . . . . . . Bpe02g01978 Bma01g00480 . . . Cmo15g01018 . Cma15g00971 . Car15g00918 Cpe13g00355 . Bhi12g00929 . . . . . . Cla01g00626 Cam01g0655 Cec01g0647 Cco01g0672 Clacu01g0643 Cmu01g0618 Cre09g1886 Lsi09g00677 . Chy09g00833 Cme09g01365
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013070 0 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 2 1 1 0 1 1 1 1 1 1 1 1 1 28