Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g1889 ATGTCTTGCTCCCAAACCCCTTATCCAGACCTCTGCTTCCATTACATAAACTCGAACAACCACGCATCGACTGCTGGTATTGGTGAAACTTCTCTCATCGTCACAGATCACTTTCAAAACTCAGCCATTCGATCCACTTTGAACCAAGCCATGATTGTCCATGACCATCTTCGCTCCGCCATGGTTCTTGATTCATTTGATGACGACGACAGAACTAAATTCGCTTTAATCGATTGTTTGGAACTCTATGAGGATTCGATCGCCGAGCTCAATCATTCGGCAATCAGTTCCATGAATATCAATTCGATTGACCACTTGACGTTGTTAAGTGCTTCATTAGCGAACCATCAAACATGTCAAGATGGATTTCGAGATTTTGGATTTTCGTCTGATGATTTGAATAATTTCTTTTTTCCATTTCAAATTTTGAGTAATTTCTCAAAATTGGTTAGCAATTCTCTTGCCATCACGAAGGCCGCCACGGCAGCCGCCGCCACTAGTTCCTCCAACTCCGGTGGCCGACGGTTGTTAGGTGGCTCGTTTCCCAAGTGGGTTTACAATGATGATAGGATGCTCCTTCAGGGCGTGGTCGGGAATCGCGCAGATATGGTGGTCGCCCAAGATGGAAGCGGCAATTTTAGGACGATATCGGAGGCGGTGGCCGCGGCGGAGGAGGCGAGGAAGGGAAGTGGAAGGTTTGTTATATATGTAAAAGGTGGGATTTACAAAGAGAATGTTGTGATTAAGAAGAGGATGAAGAATATAATGCTGATTGGAGATGGGATTGATAGGACGATCGTCACGGCCATGAAGAACGTCCAAGATGGATCAACTACTTTCCGATCAGCCACTTTTGCGGTGGCCGGCGAAGGATTCATCGCCAAAGACATGACGTTCGAGAACACGGCGGGGCCAGAGAAACACCAAGCTGTCGCACTCCGATCTAATGCTGATCGCTCACTTTTCTACCGATGCAGCTTCAAAGGCTACCAAGACACTTTGTACGCCCACTCCAACCGCCAGTTCTATCGTGAATGCCACATTTACGGAACTGTCGACTTCATTTTCGGCGACGGCATTGCTGTTTTTCAAAACTGCAACATCTTTGTCAGAAAGCCGATGATGCACCAAAAAAATACCATCACGGCGCAGGCGAGGTCGGACCCAAATGAGAACACCGGGTTCGTGATCCACAATTCCGTCATCGGAGCAGCGCCGGACTTGAAGCCGGTGGAGGGTATGTACGGAACTTATTTGGGGAGGCCATGGAAGGTGTATTCGAGGACAGTGATAATGAAGAGTTTTTTGGATGGTCTGATTGAACCAGCCGGGTGGCTTCCTTGGGCCGGAGATTTCGGTCTGAGGACGGTTTATTATGGCGAGTTTATGAACGCTGGTGGTGGAGCAAATACGAAAGGGAGGGTGCGGTGGCCGGGATACCATGTGATGACGAGTGCGGCGGAGGCTGAGAGGTTCACGGTGGAGAGTTTCTTGGAAGGAGGAGGTTGGATTCCGGCCACCGGAGTGCCATTTGCAAATGGGCTATGA 1548 48.84 MSCSQTPYPDLCFHYINSNNHASTAGIGETSLIVTDHFQNSAIRSTLNQAMIVHDHLRSAMVLDSFDDDDRTKFALIDCLELYEDSIAELNHSAISSMNINSIDHLTLLSASLANHQTCQDGFRDFGFSSDDLNNFFFPFQILSNFSKLVSNSLAITKAATAAAATSSSNSGGRRLLGGSFPKWVYNDDRMLLQGVVGNRADMVVAQDGSGNFRTISEAVAAAEEARKGSGRFVIYVKGGIYKENVVIKKRMKNIMLIGDGIDRTIVTAMKNVQDGSTTFRSATFAVAGEGFIAKDMTFENTAGPEKHQAVALRSNADRSLFYRCSFKGYQDTLYAHSNRQFYRECHIYGTVDFIFGDGIAVFQNCNIFVRKPMMHQKNTITAQARSDPNENTGFVIHNSVIGAAPDLKPVEGMYGTYLGRPWKVYSRTVIMKSFLDGLIEPAGWLPWAGDFGLRTVYYGEFMNAGGGANTKGRVRWPGYHVMTSAAEAERFTVESFLEGGGWIPATGVPFANGL 515
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 37538322 37540748 + CrPI670011_09g018890.1 Cre09g1889 508557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g1889 515 NCBIfam pectinesterase inhibitor domain 2 158 IPR006501 GO:0004857(InterPro)
Cre09g1889 515 ProSitePatterns Pectinesterase signature 1. 229 248 IPR018040 -
Cre09g1889 515 CDD PMEI-like_3 2 154 - -
Cre09g1889 515 ProSitePatterns Pectinesterase signature 2. 348 357 IPR033131 -
Cre09g1889 515 Gene3D Invertase/pectin methylesterase inhibitor family protein 1 160 IPR035513 -
Cre09g1889 515 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 2 158 IPR035513 -
Cre09g1889 515 SMART PMEI_2 1 156 IPR006501 GO:0004857(InterPro)
Cre09g1889 515 FunFam Pectinesterase 197 515 - -
Cre09g1889 515 PANTHER PECTINESTERASE 2 506 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cre09g1889 515 SUPERFAMILY Pectin lyase-like 200 513 IPR011050 -
Cre09g1889 515 Gene3D - 198 515 IPR012334 -
Cre09g1889 515 Pfam Plant invertase/pectin methylesterase inhibitor 2 156 IPR006501 GO:0004857(InterPro)
Cre09g1889 515 Pfam Pectinesterase 202 500 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0324 Cre-Chr5:2987241 Cre09g1889 Cre-Chr9:37538322 7.10E-118 dispersed
Cre09g1889 Cre-Chr9:37538322 Cre09g2047 Cre-Chr9:39579314 1.90E-137 dispersed
Cre05g2382 Cre-Chr5:35362266 Cre09g1889 Cre-Chr9:37538322 3.40E-103 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g1889 - - - 0.0