Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre09g1896 | ATGGAACACTTTTTGGGTCTTCTCCGAATTCGGGTGCTGCGCGGTGTTAATCTCGCTATTCGTGATTCTCGTAGCAGCGATCCTTATGTCGTCGTCACAATGGGTGAGCAGAGGTTGAAGACCCGGGTGGTGAAAAATAATTGCAATCCTGAATGGAACGATGAGTTGACTCTTTCAATTGCAGATCTCAGGACTCCAATCGGTATATCAGTGTATGACAAAGACACACTAACAGACCATGACAAAATGGGAGATGCCGAGATCGACATTGAACCATACATCGAATGTTTGACAATGGGACTGGAGAGCCTCCCAGATGGGTGTGTGGTTAAGAGAGTATATCCAAAAAGAACAAACAATTTAGCTGATGAGAGCCAATGTGTTTGGCACAAGGGGAAAATTGTACAGAACATGTTCCTGAGGTTGAAGAATGTGGAGTGTGGTGAGGTAGCAATTCAGCTCGAATGGATCGACGTTCCTGGTGCTAAGGGTTTGCCAGTCGGGGGTACAAACAACTTCTGA | 522 | 45.79 | MEHFLGLLRIRVLRGVNLAIRDSRSSDPYVVVTMGEQRLKTRVVKNNCNPEWNDELTLSIADLRTPIGISVYDKDTLTDHDKMGDAEIDIEPYIECLTMGLESLPDGCVVKRVYPKRTNNLADESQCVWHKGKIVQNMFLRLKNVECGEVAIQLEWIDVPGAKGLPVGGTNNF | 173 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 37696717 | 37698605 | - | CrPI670011_09g018960.1 | Cre09g1896 | 508564 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre09g1896 | 173 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 2 | 158 | IPR035892 | - | |
| Cre09g1896 | 173 | Pfam | C2 domain | 6 | 92 | IPR000008 | - | |
| Cre09g1896 | 173 | Gene3D | C2 domain | 5 | 164 | IPR035892 | - | |
| Cre09g1896 | 173 | SMART | C2_3c | 7 | 102 | IPR000008 | - | |
| Cre09g1896 | 173 | ProSiteProfiles | C2 domain profile. | 1 | 106 | IPR000008 | - | |
| Cre09g1896 | 173 | PANTHER | PROTEIN C2-DOMAIN ABA-RELATED 4 | 1 | 163 | IPR044562 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cre05g1294 | Cre-Chr5:13439096 | Cre09g1896 | Cre-Chr9:37696717 | 1.40E-54 | dispersed | |
| Cre06g2297 | Cre-Chr6:30918642 | Cre09g1896 | Cre-Chr9:37696717 | 2.40E-55 | dispersed | |
| Cre07g0983 | Cre-Chr7:11736647 | Cre09g1896 | Cre-Chr9:37696717 | 3.90E-58 | dispersed | |
| Cre09g1758 | Cre-Chr9:35942877 | Cre09g1896 | Cre-Chr9:37696717 | 1.80E-28 | dispersed | |
| Cre09g1896 | Cre-Chr9:37696717 | Cre01g1397 | Cre-Chr1:27232934 | 1.40E-55 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre09g1896 | - | - | - | 0.0 |