Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g1922 ATGGCTGTTTTTCCTATCAACTCATCCAACTTGGATCTCTCCATTTCCATGCCGGGCTTTGCTTCTTCATCGACTCGTCCTCCGCTAAATTTGTCATGCTATTGCATGTTGATTAAAGTGAAAGTGAGAATTTGTGTAGTGAGAGAATTGGACATGAACCGAGTACCGACGACAGGAGAAGCAGAAGAAGAATGGGCGGTGGCACCGAGCGCGGAGGAAGAGGAAGAAGAAAGTTGCATTAATAATGGAGGTACTAAGCCAAGGAAGAAGCTTCGCCTGTCAAAAGATCAGTCTCGTCTTCTTGAAGAAAGCTTTAGGCTCAATCATACATTAAACCCTAAGCAAAAGGAAGTATTGGCCATGGAGTTGAAGCTGAAGCCAAGACAAGTTGAAGTTTGGTTTCAGAATCGTAGGGCCAGGAGCAAACTGAAGCAAACTGAGATGGAATGCGAGTATTTGAAGAGATGGTTTGGATCATTAACAGAGCAAAACCATCGGTTGCAGCGGGAACTGGAGGAGCTGAGAGCTATCAAGGTTGCTCCATCGGCCATCGTCTCATGCCACGACCGACAACCGCCCCTCTCGACGTCTACTATAACCATGTGTCCCCGATGTGAGCGTATAACATCTAGTAACGCTGCAATCGCCACGGCAACAAAGCCATCAAAGGTGGTTACATCCACCCTGAAATTGCATCAGCCGTCGCGAGCTTGTTGA 717 47.14 MAVFPINSSNLDLSISMPGFASSSTRPPLNLSCYCMLIKVKVRICVVRELDMNRVPTTGEAEEEWAVAPSAEEEEEESCINNGGTKPRKKLRLSKDQSRLLEESFRLNHTLNPKQKEVLAMELKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNHRLQRELEELRAIKVAPSAIVSCHDRQPPLSTSTITMCPRCERITSSNAAIATATKPSKVVTSTLKLHQPSRAC 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 37998431 38001895 - CrPI670011_09g019220.1 Cre09g1922 508590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g1922 238 CDD homeodomain 87 145 IPR001356 GO:0003677(InterPro)
Cre09g1922 238 ProSiteProfiles 'Homeobox' domain profile. 84 144 IPR001356 GO:0003677(InterPro)
Cre09g1922 238 SMART halz 144 187 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cre09g1922 238 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 42 225 IPR050762 -
Cre09g1922 238 Pfam Homeodomain 88 142 IPR001356 GO:0003677(InterPro)
Cre09g1922 238 ProSitePatterns 'Homeobox' domain signature. 119 142 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cre09g1922 238 Gene3D - 82 152 - -
Cre09g1922 238 MobiDBLite consensus disorder prediction 67 89 - -
Cre09g1922 238 SUPERFAMILY Homeodomain-like 76 145 IPR009057 -
Cre09g1922 238 Pfam Homeobox associated leucine zipper 144 176 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cre09g1922 238 SMART HOX_1 86 148 IPR001356 GO:0003677(InterPro)
Cre09g1922 238 Coils Coil 157 177 - -
Cre09g1922 238 FunFam Homeobox-leucine zipper protein 18 71 149 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g1034 Cre-Chr7:14345655 Cre09g1922 Cre-Chr9:37998431 3.50E-55 dispersed
Cre09g1922 Cre-Chr9:37998431 Cre10g0495 Cre-Chr10:4074247 4.10E-34 dispersed
Cre09g1922 Cre-Chr9:37998431 Cre09g0360 Cre-Chr9:3557224 4.80E-35 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54409 PF00046 Homeodomain 2.70E-16 CL0123 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g1922 K09338 - csv:101206325 288.885