Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre09g1932 | ATGTCAAAAGCGAACGAGAGCTTCGACTCTGCTTTTCCCTCCATATCCGAGCCCCCAAATCTTCCTCCTATAAAACCACTTCATCTTCTCCATCCCTCAACTCTCTTTCTCTCTCCCTCTCTCCTTCTCTGCGTATTCTTTGCCGATTCAGTTGAAATGCACAAAAGCACCACTTCTGCGTCGAATACCATTGCTGCTGCGACCACTATGTCATCGTCGTCGCAGCTCAAGTCGCAGCTTCAAACAAACGATGTTTATGCTTCCCTCTATAATTCACCAATCTTTGCTCCAAAGCAATCCGTGCCGGTATCTCTTCCATTGACTCTCTATGGTGACTCGACTCACGCGGATTCAACCTCCTCTTCAAAAACGATAAGCAGCCACCTCTATCAAACCCGCGTCGTACAAGATCACCAGGAAATGGTCAATCGCCATAGCCTCTGTCTCACTCATCTTCGAGAAGCAACCGAAGAAGCCGATGCTCTTCGGCAAGAGAATATCCACCTCAGAAGTATTAATCACGAGCTTAGCAAACACCTCAGCCTCCTGATCCACGCTTCGGTTCAGAAACAGTACGGCTCCTCTGATCAAGCTCCTCCGTTTAATTTTGTGGAAGGATTCCGCGGACTCAGTGTATCAGAGAAGGGAGCAAGCAGTTCGGCATGGGAGGATATTTCCGATGAGAGTCCGACGAGCGTAATGGAGGGCGGAAGGGTAGAGGGCGTTGAGGTGGAGAGATTTTCGCTCCCAAAGAGCATCTCCGTGAGGTCCAATGGATACCTGAAGATGTCACAAGCCGGCACCAGCCAGGGCGGAAAGGTCCGCGCCTCATCTCGGCCCAGAACTGCAAGTCCCGTCAAAGTTACGCAGAAGGTGTACGTGCAAGGAGTGAAAGAAGAGGAAAAGCCACTGGAATTAGAGGTGTACAACCAGGGCATGTTCAAAACCGAGCTCTGCAACAAATGGCAAGAAACGGGCAGCTGCCCCTATGGAGACCACTGCCAATTCGCCCATGGAATAGAGGAGCTCCGCCCTGTGATCCGCCACCCCCGCTACAAGACGGAGGTCTGCCGGATGGTCCTCGCCGGAGTCGTCTGCCCTTACGGTCACCGCTGCCACTTTCGTCATGCACTCACTGACCAGGAAAGGCTCATGGGAACACTCAAGCCCACCTGCAGGACCACCACCCCTAAGCTCGACAGAGCAAACTATATGTAA | 1218 | 52.05 | MSKANESFDSAFPSISEPPNLPPIKPLHLLHPSTLFLSPSLLLCVFFADSVEMHKSTTSASNTIAAATTMSSSSQLKSQLQTNDVYASLYNSPIFAPKQSVPVSLPLTLYGDSTHADSTSSSKTISSHLYQTRVVQDHQEMVNRHSLCLTHLREATEEADALRQENIHLRSINHELSKHLSLLIHASVQKQYGSSDQAPPFNFVEGFRGLSVSEKGASSSAWEDISDESPTSVMEGGRVEGVEVERFSLPKSISVRSNGYLKMSQAGTSQGGKVRASSRPRTASPVKVTQKVYVQGVKEEEKPLELEVYNQGMFKTELCNKWQETGSCPYGDHCQFAHGIEELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTDQERLMGTLKPTCRTTTPKLDRANYM | 405 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 38167718 | 38171687 | - | CrPI670011_09g019320.1 | Cre09g1932 | 508600 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre09g1932 | 405 | Gene3D | - | 347 | 383 | - | - | |
Cre09g1932 | 405 | Gene3D | - | 307 | 346 | - | - | |
Cre09g1932 | 405 | FunFam | zinc finger CCCH domain-containing protein 15-like | 307 | 346 | - | - | |
Cre09g1932 | 405 | SUPERFAMILY | CCCH zinc finger | 310 | 345 | IPR036855 | GO:0046872(InterPro) | |
Cre09g1932 | 405 | SUPERFAMILY | CCCH zinc finger | 347 | 381 | IPR036855 | GO:0046872(InterPro) | |
Cre09g1932 | 405 | FunFam | Zinc finger protein 36, C3H1 type-like 1 | 347 | 383 | - | - | |
Cre09g1932 | 405 | SMART | c3hfinal6 | 313 | 340 | IPR000571 | GO:0046872(InterPro) | |
Cre09g1932 | 405 | SMART | c3hfinal6 | 351 | 378 | IPR000571 | GO:0046872(InterPro) | |
Cre09g1932 | 405 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 314 | 339 | IPR000571 | GO:0046872(InterPro) | |
Cre09g1932 | 405 | ProSiteProfiles | Zinc finger C3H1-type profile. | 351 | 379 | IPR000571 | GO:0046872(InterPro) | |
Cre09g1932 | 405 | ProSiteProfiles | Zinc finger C3H1-type profile. | 313 | 341 | IPR000571 | GO:0046872(InterPro) | |
Cre09g1932 | 405 | PANTHER | CCCH ZINC FINGER/TIS11-RELATED | 108 | 382 | IPR045877 | GO:0003729(InterPro) | |
Cre09g1932 | 405 | Coils | Coil | 152 | 172 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre09g1932 | Cre-Chr9:38167718 | Cre11g1207 | Cre-Chr11:10048024 | 1.30E-35 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
54410 | PF00642 | zf-CCCH | 6.50E-12 | CL0537 | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre09g1932 | K18753 | - | csv:101203274 | 622.083 |