Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g1932 ATGTCAAAAGCGAACGAGAGCTTCGACTCTGCTTTTCCCTCCATATCCGAGCCCCCAAATCTTCCTCCTATAAAACCACTTCATCTTCTCCATCCCTCAACTCTCTTTCTCTCTCCCTCTCTCCTTCTCTGCGTATTCTTTGCCGATTCAGTTGAAATGCACAAAAGCACCACTTCTGCGTCGAATACCATTGCTGCTGCGACCACTATGTCATCGTCGTCGCAGCTCAAGTCGCAGCTTCAAACAAACGATGTTTATGCTTCCCTCTATAATTCACCAATCTTTGCTCCAAAGCAATCCGTGCCGGTATCTCTTCCATTGACTCTCTATGGTGACTCGACTCACGCGGATTCAACCTCCTCTTCAAAAACGATAAGCAGCCACCTCTATCAAACCCGCGTCGTACAAGATCACCAGGAAATGGTCAATCGCCATAGCCTCTGTCTCACTCATCTTCGAGAAGCAACCGAAGAAGCCGATGCTCTTCGGCAAGAGAATATCCACCTCAGAAGTATTAATCACGAGCTTAGCAAACACCTCAGCCTCCTGATCCACGCTTCGGTTCAGAAACAGTACGGCTCCTCTGATCAAGCTCCTCCGTTTAATTTTGTGGAAGGATTCCGCGGACTCAGTGTATCAGAGAAGGGAGCAAGCAGTTCGGCATGGGAGGATATTTCCGATGAGAGTCCGACGAGCGTAATGGAGGGCGGAAGGGTAGAGGGCGTTGAGGTGGAGAGATTTTCGCTCCCAAAGAGCATCTCCGTGAGGTCCAATGGATACCTGAAGATGTCACAAGCCGGCACCAGCCAGGGCGGAAAGGTCCGCGCCTCATCTCGGCCCAGAACTGCAAGTCCCGTCAAAGTTACGCAGAAGGTGTACGTGCAAGGAGTGAAAGAAGAGGAAAAGCCACTGGAATTAGAGGTGTACAACCAGGGCATGTTCAAAACCGAGCTCTGCAACAAATGGCAAGAAACGGGCAGCTGCCCCTATGGAGACCACTGCCAATTCGCCCATGGAATAGAGGAGCTCCGCCCTGTGATCCGCCACCCCCGCTACAAGACGGAGGTCTGCCGGATGGTCCTCGCCGGAGTCGTCTGCCCTTACGGTCACCGCTGCCACTTTCGTCATGCACTCACTGACCAGGAAAGGCTCATGGGAACACTCAAGCCCACCTGCAGGACCACCACCCCTAAGCTCGACAGAGCAAACTATATGTAA 1218 52.05 MSKANESFDSAFPSISEPPNLPPIKPLHLLHPSTLFLSPSLLLCVFFADSVEMHKSTTSASNTIAAATTMSSSSQLKSQLQTNDVYASLYNSPIFAPKQSVPVSLPLTLYGDSTHADSTSSSKTISSHLYQTRVVQDHQEMVNRHSLCLTHLREATEEADALRQENIHLRSINHELSKHLSLLIHASVQKQYGSSDQAPPFNFVEGFRGLSVSEKGASSSAWEDISDESPTSVMEGGRVEGVEVERFSLPKSISVRSNGYLKMSQAGTSQGGKVRASSRPRTASPVKVTQKVYVQGVKEEEKPLELEVYNQGMFKTELCNKWQETGSCPYGDHCQFAHGIEELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTDQERLMGTLKPTCRTTTPKLDRANYM 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 38167718 38171687 - CrPI670011_09g019320.1 Cre09g1932 508600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g1932 405 Gene3D - 347 383 - -
Cre09g1932 405 Gene3D - 307 346 - -
Cre09g1932 405 FunFam zinc finger CCCH domain-containing protein 15-like 307 346 - -
Cre09g1932 405 SUPERFAMILY CCCH zinc finger 310 345 IPR036855 GO:0046872(InterPro)
Cre09g1932 405 SUPERFAMILY CCCH zinc finger 347 381 IPR036855 GO:0046872(InterPro)
Cre09g1932 405 FunFam Zinc finger protein 36, C3H1 type-like 1 347 383 - -
Cre09g1932 405 SMART c3hfinal6 313 340 IPR000571 GO:0046872(InterPro)
Cre09g1932 405 SMART c3hfinal6 351 378 IPR000571 GO:0046872(InterPro)
Cre09g1932 405 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 314 339 IPR000571 GO:0046872(InterPro)
Cre09g1932 405 ProSiteProfiles Zinc finger C3H1-type profile. 351 379 IPR000571 GO:0046872(InterPro)
Cre09g1932 405 ProSiteProfiles Zinc finger C3H1-type profile. 313 341 IPR000571 GO:0046872(InterPro)
Cre09g1932 405 PANTHER CCCH ZINC FINGER/TIS11-RELATED 108 382 IPR045877 GO:0003729(InterPro)
Cre09g1932 405 Coils Coil 152 172 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre09g1932 Cre-Chr9:38167718 Cre11g1207 Cre-Chr11:10048024 1.30E-35 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54410 PF00642 zf-CCCH 6.50E-12 CL0537 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g1932 K18753 - csv:101203274 622.083