Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g1945 ATGAGTGGCGGTGGCAGTGGCACTCCTCGAAGCACTAGGGATTTGATCTGCAACGCCGGTGCCGGTGCTGCCGCAGGTTCTATAGCAGCCACGTTCGTTTGCCCTTTAGATGTAATCAAGACGAGGCTGCAAGTGCATGGTCTTCCATCTGGTCAACGAGGAGGTAGTGTTATTATCACTAGCCTACAAGACATAATGCGTTCTGAAGGTTTCAGGGGAATGTACCGTGGCCTTTCACCAACAATAGTAGCGCTTCTTCCAAACTGGGCTGTCTACTTCACAGTTTATGAGCATCTAAAAGGCCTACTTCATTCAGATGGGGACGATGGTCATCAACTCTCATTTGGGGAACATATGGTTGCTGCTGCTGGAGCTGGGGCATCTACTGCCATTGCAACAAATCCTTTGTGGGTTGTTAAGACAAGACTCCAAACACAGGGAATGAGGCCTGGTGTGGTTCCTTACACAGGCATGGTTTCAGCATTTACCAGGATCGTACAGGAAGAAGGAATTCGTGGGCTTTACAGTGGTATCATCCCTTCATTGGTTGGGATAAGTCATGTTGCGATTCAATTTCCTGCATACGAAAAGCTCAAATCGTATATGGCAGAAAGAGATAACACGACCATTGACAAGCTAAGTCCAGGACATTTAGCTATTGCCTCCTCGTTGTCAAAAATTACGGCCTCCGTAACGACTTACCCACATGAGGTAGTTCGTTCCCGGCTACAAGAGCAAGGCCAAGCCAGAAACGTTGCTCCTCAATACTCAGGAGTAATGGACTGTATCAAAAAGGTTTTTCGAAAGGAAGGTCTCCCCGGTTTTTATAGAGGTTGTGCGACGAATCTGTTGCGAACAACTCCATCCGCTGTAATAACTTTCACCAGCTATGAAATGATACATAGGTTCCTACTGCGAGTTATACCTTCAAGCGAGGAGAAATATTCCAAAACTCAACCGAACTCCGGTAGCAATAGCCATGCGAAGCCCCAAAAGGCGATCAGAGACGACTCAAAGGAAGATAGTGATTCCAGCATACAACAATCACAATCCCAACCAAGTAAGCAAACTAGAATTCCTCTGGGGAATAAAGAACACTTAACATCTAGACATTGA 1116 46.33 MSGGGSGTPRSTRDLICNAGAGAAAGSIAATFVCPLDVIKTRLQVHGLPSGQRGGSVIITSLQDIMRSEGFRGMYRGLSPTIVALLPNWAVYFTVYEHLKGLLHSDGDDGHQLSFGEHMVAAAGAGASTAIATNPLWVVKTRLQTQGMRPGVVPYTGMVSAFTRIVQEEGIRGLYSGIIPSLVGISHVAIQFPAYEKLKSYMAERDNTTIDKLSPGHLAIASSLSKITASVTTYPHEVVRSRLQEQGQARNVAPQYSGVMDCIKKVFRKEGLPGFYRGCATNLLRTTPSAVITFTSYEMIHRFLLRVIPSSEEKYSKTQPNSGSNSHAKPQKAIRDDSKEDSDSSIQQSQSQPSKQTRIPLGNKEHLTSRH 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 38283890 38287836 - CrPI670011_09g019450.1 Cre09g1945 508613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g1945 371 Gene3D Mitochondrial carrier domain 109 316 IPR023395 -
Cre09g1945 371 Gene3D Mitochondrial carrier domain 4 108 IPR023395 -
Cre09g1945 371 ProSiteProfiles Solute carrier (Solcar) repeat profile. 13 102 IPR018108 -
Cre09g1945 371 PRINTS Mitochondrial carrier protein signature 128 146 IPR002067 GO:0055085(InterPro)
Cre09g1945 371 PRINTS Mitochondrial carrier protein signature 31 45 IPR002067 GO:0055085(InterPro)
Cre09g1945 371 PRINTS Mitochondrial carrier protein signature 77 97 IPR002067 GO:0055085(InterPro)
Cre09g1945 371 PRINTS Mitochondrial carrier protein signature 18 31 IPR002067 GO:0055085(InterPro)
Cre09g1945 371 PRINTS Mitochondrial carrier protein signature 175 193 IPR002067 GO:0055085(InterPro)
Cre09g1945 371 PRINTS Mitochondrial carrier protein signature 222 244 IPR002067 GO:0055085(InterPro)
Cre09g1945 371 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 11 319 IPR044712 GO:0006862(InterPro)|GO:0022857(PANTHER)|GO:0035352(PANTHER)|GO:0051724(PANTHER)|GO:0055085(PANTHER)|GO:0055085(InterPro)
Cre09g1945 371 FunFam Nicotinamide adenine dinucleotide transporter 2, mitochondrial 14 304 - -
Cre09g1945 371 ProSiteProfiles Solute carrier (Solcar) repeat profile. 113 201 IPR018108 -
Cre09g1945 371 ProSiteProfiles Solute carrier (Solcar) repeat profile. 213 303 IPR018108 -
Cre09g1945 371 MobiDBLite consensus disorder prediction 344 363 - -
Cre09g1945 371 MobiDBLite consensus disorder prediction 314 371 - -
Cre09g1945 371 Pfam Mitochondrial carrier protein 212 305 IPR018108 -
Cre09g1945 371 Pfam Mitochondrial carrier protein 16 105 IPR018108 -
Cre09g1945 371 Pfam Mitochondrial carrier protein 112 204 IPR018108 -
Cre09g1945 371 MobiDBLite consensus disorder prediction 314 329 - -
Cre09g1945 371 SUPERFAMILY Mitochondrial carrier 14 299 IPR023395 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2578 Cre-Chr5:36978437 Cre09g1945 Cre-Chr9:38283890 1.20E-25 dispersed
Cre06g1281 Cre-Chr6:6713349 Cre09g1945 Cre-Chr9:38283890 3.70E-33 dispersed
Cre09g0527 Cre-Chr9:4941293 Cre09g1945 Cre-Chr9:38283890 1.90E-119 dispersed
Cre09g0611 Cre-Chr9:5755586 Cre09g1945 Cre-Chr9:38283890 6.20E-19 dispersed
Cre09g1945 Cre-Chr9:38283890 Cre09g2252 Cre-Chr9:41717831 1.90E-14 dispersed
Cre09g1945 Cre-Chr9:38283890 Cre09g1151 Cre-Chr9:12709207 5.80E-27 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g1945 K15115 - csv:101216902 641.343