Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g1946 ATGAAGAGCCAAATTCAGAGTCCGAAGCTAATCCATATCCATCTTAGCTTCTTCAACGTCGTCCCTTACATCCTCCTCTTCACCGCCGGAATCACCGCCGGAGTTTTCTTCACTTTCTATCTCTCCAATTTCTCCATCAGCTTAAACCTCACCCAGATCCCTTCTTCGAGTTTTCTTCCTGTGACCGGTGGCCGGGTGGGGTTGGAAGAGTATTTGAAGCCGCCGGAAGTAATGCACGACATGGAGGACGAGGAGCTTCTGTGGAGAGCTTCAATGGCGGCCGGAATTAAGAAATTTCCGTTCCGGCGGGTTCCAAAGATAGCGTTCATGTTCTTGACGAAAGGGCCGGTGTATTTGGCTCCTCTTTGGGAAGAATTCTTTAAGGGAAATGAAGGGCTTTACTCTGTTTATGTTCATTCTGATCCTTCCTATAATCATTCTTTCCCTGAATCCCCTGTTTTCCATGGCCGCAGAATCCCCAGCAAGAAAGTGGAATGGGGAAAGGTGAACATGATCGAGGCAGAACGACGCCTACTATCAAATGCACTCCTTGACATTTCAAACGAGCGATTTGTTCTCCTCTCAGAAGCTTGCATTCCCCTCTTCAACTTCTCCACAGTCTACTCCTTCCTCATCAACTCCACCATGAAAAGCTTCATCATGAGCTACGACGAACCCAGTAATGTCGGTCGCGGCCGATACAGGAACAAAATGTTCCCACCCATCTCCCTAAAACAATGGCGAAAAGGCTCTCAGTGGTTCGAAATGGATCGGGACACCGCCATTGTTGTCGTCTCTGACAAGAAGTACTTTCCGGTCTTTCAAAATTATTGTAAAGGCCAATGTTACTCCGATGAACATTACTTTCCAACCTTGGCCAATGTTTTGGGTTGGGATAGGAATGCCAATCGGAGTTTGACTTGGGTTGACTGGTCAAAGGGTGGCCCACATCCTGCAAGATTTTCGTGGTCAGATATCAACGTGGAGCTTTTCCGAAAATTAAGGAATCAAACTGGTGAATGTATAAAAACTAAAATGGAAGGGCCAGGTATCTGCTTCCTATTTGCTAGAAAGTTTGCTCCAAACACATTAAAGAGGTTGATGAAGATTGCACCAAAGGCGATGCATTTTGGGGAATAG 1140 46.32 MKSQIQSPKLIHIHLSFFNVVPYILLFTAGITAGVFFTFYLSNFSISLNLTQIPSSSFLPVTGGRVGLEEYLKPPEVMHDMEDEELLWRASMAAGIKKFPFRRVPKIAFMFLTKGPVYLAPLWEEFFKGNEGLYSVYVHSDPSYNHSFPESPVFHGRRIPSKKVEWGKVNMIEAERRLLSNALLDISNERFVLLSEACIPLFNFSTVYSFLINSTMKSFIMSYDEPSNVGRGRYRNKMFPPISLKQWRKGSQWFEMDRDTAIVVVSDKKYFPVFQNYCKGQCYSDEHYFPTLANVLGWDRNANRSLTWVDWSKGGPHPARFSWSDINVELFRKLRNQTGECIKTKMEGPGICFLFARKFAPNTLKRLMKIAPKAMHFGE 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 38293911 38295784 - CrPI670011_09g019460.1 Cre09g1946 508614

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g1946 379 PANTHER CORE-2/I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN-RELATED 36 373 IPR044174 GO:0016757(InterPro)
Cre09g1946 379 Pfam Core-2/I-Branching enzyme 107 335 IPR003406 GO:0016020(InterPro)|GO:0016757(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g1946 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1438 Cre-Chr1:27640401 Cre09g1946 Cre-Chr9:38293911 7.40E-93 dispersed
Cre07g1712 Cre-Chr7:32573584 Cre09g1946 Cre-Chr9:38293911 3.40E-99 dispersed
Cre09g1946 Cre-Chr9:38293911 Cre10g0917 Cre-Chr10:10686706 1.10E-97 dispersed
Cre09g1946 Cre-Chr9:38293911 Cre06g2336 Cre-Chr6:31283839 3.30E-102 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g340 Blo01g00733 . Bda01g01847 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone9ag0449 . Csa05g02066 . . . . . . . Bpe02g02024 . . . . Cmo15g00962 . Cma15g00923 . Car15g00865 Cpe13g00397 . Bhi12g00834 . . . . . Lcy10g1475 Cla01g00570 Cam01g0596 Cec01g0585 Cco01g0611 Clacu01g0589 Cmu01g0561 Cre09g1946 Lsi09g00618 . Chy09g00894 Cme09g01427
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002751 1 2 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 3 1 2 2 2 2 2 2 2 2 2 2 3 57