Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g1951 ATGAAAGCGATGAAAATAGACGCTGTTTACGGAAAATCACCTGGTGACAAAATCGCTCTCGCTTCACCATTAACAGCTCCCACCATATTCGGCACGGCAGCCACGTGTAATATCCTAATTGGCTGCCAGAGCTTCGACGATGACTGTAAATTGCTTGGCAACCTTCTTCACGATGTCTTACAGCGCGAAGTTGGCACCGAATTCATGGACAAACTTGAACGAACTCGAGTCCTCGCTCAGAGCGCCTGCAATATGAGGATGGCGGGCATCGAGGATACGGCAGATATGCTTGAGAGGCAGCTTGCATCGGAGTTGTCGGAAATGACTTTAGACGAAGCGTTCTCTCTGGCTCGTGCATTCAGCCATTCTCTCAATTTGATGGGGATTGCAGAAACCCACCACAGGGTTCGTAAGTCGAGAAATATTGCACCTCTATCAAGATCCTGCGATGAAGTTTTTAATCAGCTGGTGCAGGGCGGAGTTTCTCCTGACGAGCTTTACGACAGTGTTTGCAAGCAGGAGGTTGAAATTGTTCTTACAGCACATCCAACTCAAATTAATCGTCGTACTTTGCAATACAAACATCTTCGCATTGCACATCTATTGGACTACAATGACCGACCTGACCTTAGTCCTGAAGATCGGGAAATGCTAATTGATGATCTGGTGAGAGAGATAACTTCAATATGGCAGACAGATGAACTTAGACGCCACAAGCCCACACCAGTTGATGAAGCTAGGGCTGGCTTGAACATTGTGGAACAGTCCCTGTGGAAAGCTGTGCCTTATTATTTACGTCGACTCAGCAATGCCTTAAAGAAGCACACTGGAAGGTCGCTTCCTTTGACTTGCACACCAATAAAATTTGGGTCTTGGATGGGAGGCGATAGGGATGGAAATCCAAATGTCACAGCAAAAGTCACAAGAGACGTCTCTCTTTTGTCTAGGTGGATGGCTATTGATCTATACATTCGAGAGCTTGATAGCTTGCAGTTTGAACTTTCCATGCACCGATGCAGCGATAGATTATACAGACTGGCACATGAAATTCTTGAAAAGGGTAATATTATACAGACCGAAGCTGTAGCTGAAGATCGACACGAGATATGGAATCAGTCTTCAAGCAAAAATGAATTGAAGAATCAGGGCCATCAAGCTGCTGCACTTCCAAGACAACTTCCACTTAGGGCTGATCTACCTTCATGCACGGATTGCAATGATGGTGAATCCAGGTATTCTAGAGTCGAATTTCCGAGGACTGATCATACGTCATCAAATAATCAGGAAATTACTGTCCCTGATACAAGTGCATCTTTATCAAATGGGAATTCATCTAGTGCAAGTGCATTTCAGTCGAATTCTATGCCTCGTAGTGCATCTTTCAACTCGACTCAACTCCTTGCTCAGAGGAAACTGTTTGCAGAATCTCAGATTGGGAGGACCAGTTTTCAGAAGCTTTTAGAACCCAGGCTCCCTCTACGTCCTGGAATTGCACCCTACCGCGTTGTGCTGGGTAGTGTAAAAGACAAGCTTGTAAAAACACGGAGGAGGCTGGAGCTGCTTCTTGAGGATCTTCCTTGTGAACAAGATCCTTCGGATTACTATGAGACTGCAGATCAACTATTGGAGCCGCTGCTTTTATGCTATGAATCTCTGCAATCATGTGGATCTGTGGTGCTTGCTGATGGTCGGTTAGTTGATCTGATTAGAAGAGTTGCTACATTTGGTATGGTATTAATGAAGCTGGATTTACGTCAGGAATCTGGTAGACATGCCGAAACTTTGGACGCCATTACAACGTATTTGGACATGGGTTCATATAGTGACTGGGATGAAGAAAGGAAGTTGGAATTTCTAACAAGAGAGCTGAAGGGGAAGCGACCACTAGTTCCTCCAACTATTGAGGTTCCTTCTGATGTTAAAGAAGTTTTGGATACCTTTCGTGTTGCTGCTGAACTAGGGAGTGAATCACTTGGTGCCTATGTGATCTCTATGGCCTCGAATGCAAGTGACGTCCTTGCAGTGGAACTTCTGCAGAAGGATGCACGACTTGCTGTTAGTGGCGAGTTAGGACGACCATGTCCTGGTGGAACGTTGCGGGTGGTTCCTCTGTTTGAAACTGTGGACGACTTGAGGAAAGCAGGATCGTCGATCAGGAAACTATTATCTATTGATTGGTATCGAGAACACATAATAAAGAACCATAATGGGCATCAAGAGGTCATGGTAGGTTATTCTGATTCTGGAAAAGATGCTGGGCGCTTCACTGCTGCATGGGAACTTTACAAAGCTCAAGAAGATGTTGTGGCTGCATGTAACGAGTATGGTATTAAAGTTACCCTGTTCCATGGGCGTGGAGGGAGCATCGGCCGTGGTGGTGGGCCAACGTATCTGGCCATTCAATCCCAGCCTCCAGGTTCGGTAATGGGTACTTTACGATCAACTGAGCAAGGGGAGATGGTACAGGCGAAGTTCGGGTTGCCGCAGACTGCTGTTAGACAGCTAGAGATATATACCACGGCCGTACTCCTTTCAACTCTGCGTCCACCACTTCCACCTCGAGAAGCAAAATGGCGTAAGCTCATGGAGGAGATCTCAAAAATCAGCTGTGAGAATTACCGGAGCATGGTATATGAAAATCCAGAATTCATTTCATACTTCAATGAGGCCACTCCTCAAGCAGAGCTTGGCTTCCTTAACATTGGAAGCCGGCCAACAAGAAGAAAGACCTCTGTTGGGATCGGGCATCTTCGAGCTATACCATGGGTTTTTGCTTGGACACAAACTAGATCTGTTCTTCCAGCTTGGCTTGGGGTTGGGGCAGGTTTAAAAGGTGTATGTGAAAAGGGTCACACTGAAGACTTGAAATCAATGTACGAAGAGTGGCCTTTCTTCCAGAGCACCCTAGACCTTATAGAGATGGTTTTGGGGAAAGCTGATACTCATATTGCAAAGCATTATGATGAAGTCCTTGTGTCGGAGAGTCGGCGCGAAATCGGATCTACATTGAGGAAGGAACTAGTAGAGACTGAGAAATATGTTTTGGTAGTAAGCAGACATGGGAAACTGTCTGAGAACAATCGAAGTTTGAGAAAGCTGATCGAAAGCAGACTTCATTATCTTAATCCTTTGAACCTACTACAAGTTGAGATATTAAAAAGGCTGAGATGTGATGCAGAGAACAACAAACTAAGAGATGCATTGCTTATTACTATCAATGGGATAGCAGCTGGAATGAGGAACACAGCGGAAAAGGCAGTAAGAGCCCAAATGGGGGTAGCTTCATTTTTTCTGACATATATGCCAGCTGCTGGCCATGTGAACGCTAGAGAAAAGGAAGAATTGAAACAATTTTAG 3357 45.28 MKAMKIDAVYGKSPGDKIALASPLTAPTIFGTAATCNILIGCQSFDDDCKLLGNLLHDVLQREVGTEFMDKLERTRVLAQSACNMRMAGIEDTADMLERQLASELSEMTLDEAFSLARAFSHSLNLMGIAETHHRVRKSRNIAPLSRSCDEVFNQLVQGGVSPDELYDSVCKQEVEIVLTAHPTQINRRTLQYKHLRIAHLLDYNDRPDLSPEDREMLIDDLVREITSIWQTDELRRHKPTPVDEARAGLNIVEQSLWKAVPYYLRRLSNALKKHTGRSLPLTCTPIKFGSWMGGDRDGNPNVTAKVTRDVSLLSRWMAIDLYIRELDSLQFELSMHRCSDRLYRLAHEILEKGNIIQTEAVAEDRHEIWNQSSSKNELKNQGHQAAALPRQLPLRADLPSCTDCNDGESRYSRVEFPRTDHTSSNNQEITVPDTSASLSNGNSSSASAFQSNSMPRSASFNSTQLLAQRKLFAESQIGRTSFQKLLEPRLPLRPGIAPYRVVLGSVKDKLVKTRRRLELLLEDLPCEQDPSDYYETADQLLEPLLLCYESLQSCGSVVLADGRLVDLIRRVATFGMVLMKLDLRQESGRHAETLDAITTYLDMGSYSDWDEERKLEFLTRELKGKRPLVPPTIEVPSDVKEVLDTFRVAAELGSESLGAYVISMASNASDVLAVELLQKDARLAVSGELGRPCPGGTLRVVPLFETVDDLRKAGSSIRKLLSIDWYREHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEYGIKVTLFHGRGGSIGRGGGPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLSTLRPPLPPREAKWRKLMEEISKISCENYRSMVYENPEFISYFNEATPQAELGFLNIGSRPTRRKTSVGIGHLRAIPWVFAWTQTRSVLPAWLGVGAGLKGVCEKGHTEDLKSMYEEWPFFQSTLDLIEMVLGKADTHIAKHYDEVLVSESRREIGSTLRKELVETEKYVLVVSRHGKLSENNRSLRKLIESRLHYLNPLNLLQVEILKRLRCDAENNKLRDALLITINGIAAGMRNTAEKAVRAQMGVASFFLTYMPAAGHVNAREKEELKQF 1118
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 38371578 38383322 - CrPI670011_09g019510.1 Cre09g1951 508619

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g1951 1118 FunFam Phosphoenolpyruvate carboxylase 4 457 577 - -
Cre09g1951 1118 MobiDBLite consensus disorder prediction 373 392 - -
Cre09g1951 1118 MobiDBLite consensus disorder prediction 419 456 - -
Cre09g1951 1118 Coils Coil 87 107 - -
Cre09g1951 1118 Hamap Phosphoenolpyruvate carboxylase [ppc]. 31 1083 IPR022805 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Cre09g1951 1118 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 45 1082 IPR015813 GO:0003824(InterPro)
Cre09g1951 1118 Gene3D Phosphoenolpyruvate/pyruvate domain 317 397 - -
Cre09g1951 1118 Gene3D Phosphoenolpyruvate/pyruvate domain 445 577 - -
Cre09g1951 1118 ProSitePatterns Phosphoenolpyruvate carboxylase active site 2. 741 753 IPR033129 -
Cre09g1951 1118 PRINTS Phosphoenolpyruvate carboxylase signature 230 246 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Cre09g1951 1118 PRINTS Phosphoenolpyruvate carboxylase signature 289 304 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Cre09g1951 1118 PRINTS Phosphoenolpyruvate carboxylase signature 177 190 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Cre09g1951 1118 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 41 1082 IPR021135 GO:0005829(PANTHER)|GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0008964(PANTHER)|GO:0015977(InterPro)
Cre09g1951 1118 Pfam Phosphoenolpyruvate carboxylase 494 1082 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Cre09g1951 1118 Pfam Phosphoenolpyruvate carboxylase 47 369 IPR021135 GO:0006099(InterPro)|GO:0008964(InterPro)|GO:0015977(InterPro)
Cre09g1951 1118 MobiDBLite consensus disorder prediction 410 456 - -
Cre09g1951 1118 ProSitePatterns Phosphoenolpyruvate carboxylase active site 1. 178 189 IPR018129 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g1951 K01595 - - csv:101216256 1913.66
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre07g0634 Cre-Chr7:4144637 Cre09g1951 Cre-Chr9:38371578 3.30E-199 dispersed
Cre09g1951 Cre-Chr9:38371578 Cre11g2160 Cre-Chr11:33242018 1.30E-199 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g241 . Blo16g01045 . Bda11g01124 Bpe13g01321 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g02069 . . . . . Bda11g01124 . . . Bma06g00779 . . . . Cma15g01420 . Car15g01282 Cpe13g00027 . Bhi12g00828 . . . . . Lcy10g0852 Cla01g00567 Cam01g0590 Cec01g0582 Cco01g0606 Clacu01g0585 Cmu01g0556 Cre09g1951 Lsi09g00615 . Chy09g00939 Cme09g01467
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008238 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 3 1 35