Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g1960 ATGTATCAAGAAGAACAATATGAGGATCAGCTCATCAACTCATATGATGATCTACATTTCCCACATCCTTTTCTCGACGATGACGACCTATTTTTAAGCCACTTTTTATCACAACAGCAGCAGCAACAACAACTCTTCGAACAAGAAGAAAAACAAGATCATGAGGTTGATGAAACAATGAGAAAGATGAAGACGAAGACGAAGAAGAAGAAAGTAAGCGGTGGTAATAGTAATAGAAAAAATGGAAGGAGCTGCACAAAGAGAAGAGGGAAGAAGGACAGACATAGTAAGATCTACACAGCACAAGGCCCAAGAGACCGTAGAATGAGGCTGTCCCTTCAAATTGCAAGGAAATTCTTCGACCTTCAAGACATGCTAGGCTTTGACAAAGCTAGCCAAACCATAGAGTGGCTTCTTCTTAACTCAAATTCAGCCATTAAAGATCTCAAACAAACCTACTTCTCAAACAATAGTGGGGTTACCCATGGCAGTGTTTATTCTGGCCAATCAAGTGAGGTTGTGTCAGAGATTAATAATCAAGATCAAGAACAAGAAGAAGCTGGTGGTTTTACGGGCAGTTTCAAAGACAAAAAGGGCAGGCAATTACGTACTGTTGGTAGAGAGGCAAGGGATAGGGCAAGAGCTAGGGCAAGACAAAGGACACTCTTGAAAAATACTTCATTCCTACAGCCTCCTATTAATTTGGATCATCATCTCTCAGGTAATAATAATAATAATAACACCTATCTTGATTATCCAACATTTTCTTGCCCTAATTCCATTTTCCTTCCCTCTCCACTTTCCTTACCCTACTCTTTTTCTGATTCCACATTACTCAAATTGCCCTAA 849 39.69 MYQEEQYEDQLINSYDDLHFPHPFLDDDDLFLSHFLSQQQQQQQLFEQEEKQDHEVDETMRKMKTKTKKKKVSGGNSNRKNGRSCTKRRGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASQTIEWLLLNSNSAIKDLKQTYFSNNSGVTHGSVYSGQSSEVVSEINNQDQEQEEAGGFTGSFKDKKGRQLRTVGREARDRARARARQRTLLKNTSFLQPPINLDHHLSGNNNNNNTYLDYPTFSCPNSIFLPSPLSLPYSFSDSTLLKLP 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 38495677 38496525 + CrPI670011_09g019600.1 Cre09g1960 508628

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g1960 282 MobiDBLite consensus disorder prediction 47 63 - -
Cre09g1960 282 MobiDBLite consensus disorder prediction 190 204 - -
Cre09g1960 282 ProSiteProfiles TCP domain profile. 91 149 IPR017887 -
Cre09g1960 282 MobiDBLite consensus disorder prediction 42 105 - -
Cre09g1960 282 MobiDBLite consensus disorder prediction 179 204 - -
Cre09g1960 282 MobiDBLite consensus disorder prediction 64 95 - -
Cre09g1960 282 Pfam TCP family transcription factor 90 225 IPR017887 -
Cre09g1960 282 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 62 241 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:2000032(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g1960 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1466 Cre-Chr1:27894508 Cre09g1960 Cre-Chr9:38495677 9.40E-19 dispersed
Cre05g1366 Cre-Chr5:15699025 Cre09g1960 Cre-Chr9:38495677 5.00E-21 dispersed
Cre06g2369 Cre-Chr6:31627886 Cre09g1960 Cre-Chr9:38495677 4.60E-18 dispersed
Cre09g1960 Cre-Chr9:38495677 Cre11g1026 Cre-Chr11:7583715 3.60E-21 dispersed
Cre05g2479 Cre-Chr5:36190999 Cre09g1960 Cre-Chr9:38495677 5.50E-24 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g254 . Blo16g01048 . Bda11g01129 Bpe13g01326 . . . . Cmo18g01066 . Cma18g01048 Car04g01587 Car18g00973 Sed11g1580 Cpe09g00271 Cpe01g01756 Bhi07g01375 Tan04g0902 Cmetu10g0068 Lac13g0454 Hepe01g1225 . . Cla05g02333 Cam05g2507 Cec05g2530 Cco05g2573 Clacu05g2501 Cmu05g2363 Cre05g2479 Cone13ag0859 . . . Lsi04g00294 Csa05g02078 Chy10g01112 Cme10g00295 . . . Bda11g01129 . . . . . . . . Cma15g01416 . Car15g01279 Cpe13g00032 . . . . . . . . Cla01g00558 Cam01g0582 Cec01g0574 Cco01g0597 Clacu01g0576 Cmu01g0547 Cre09g1960 Lsi09g00602 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002245 2 1 1 2 1 2 4 2 2 2 2 2 3 2 2 3 2 1 4 2 2 2 2 2 3 2 2 3 2 1 63
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54413 PF03634 TCP 6.70E-40 No_clan Cre TF