Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre09g1965 | ATGGATTTTTCCGATTCCTTTTCTTCCTCCCAACTTTGCCACCGCTCCAATCACTCCGACGAGGAGCTTCTTTTGGCGTCCCGATATCCGAAGAAGAGAGCTGGCAGAAAGAAGTTTAAGGAAACTCGCCACCCTATCTTCCGTGGGGTGCGACAGCGGAACTCCGGCAAGTGGGTTTGTGAAGTCAGAGAGCCCAATAAGAAGACTAGGATTTGGCTTGGCACTTTCCCCACTGCTGAGATGGCTGCTCGCGCTCACGATGTTGCTGCCATCGCTCTCCGTGGCCGCTCTGCTTGTCTTAATTTTGCTGACTCTGCCTCCACGCTTCCCGTTCCGGCTACTGTCGATCCTAAGGATATACAGAGGGCTGCGGCTCAGGCTGCAGACGCCTTCCGCCCTCCCGAGGATCGATTGAGGCCTGCCGTGGAGGCGGCGGAGGAGGAAGAGGTGTTTTATTTGGATGAGGAGGCGTTGTTTGGGATGCCGGGGTTGCTGGCGGATATGGCGGAGGCAATGCTGTTGCCGCCGCCCAATTGTGTGGGGAACGACAATGACGACTATGGGGTTAATTCTATGGATTTCGATGCCGACATGTCGTTGTGGAGTTACTCAATTTGA | 618 | 54.85 | MDFSDSFSSSQLCHRSNHSDEELLLASRYPKKRAGRKKFKETRHPIFRGVRQRNSGKWVCEVREPNKKTRIWLGTFPTAEMAARAHDVAAIALRGRSACLNFADSASTLPVPATVDPKDIQRAAAQAADAFRPPEDRLRPAVEAAEEEEVFYLDEEALFGMPGLLADMAEAMLLPPPNCVGNDNDDYGVNSMDFDADMSLWSYSI | 205 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 38577931 | 38578548 | - | CrPI670011_09g019650.1 | Cre09g1965 | 508633 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre09g1965 | 205 | CDD | AP2 | 45 | 105 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre09g1965 | 205 | Gene3D | AP2/ERF domain | 46 | 104 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre09g1965 | 205 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D | 5 | 203 | IPR045277 | GO:0003700(InterPro) | |
Cre09g1965 | 205 | PRINTS | Ethylene responsive element binding protein signature | 69 | 85 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre09g1965 | 205 | PRINTS | Ethylene responsive element binding protein signature | 47 | 58 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre09g1965 | 205 | Pfam | AP2 domain | 46 | 95 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre09g1965 | 205 | SUPERFAMILY | DNA-binding domain | 46 | 105 | IPR016177 | GO:0003677(InterPro) | |
Cre09g1965 | 205 | FunFam | Ethylene-responsive transcription factor 2 | 45 | 104 | - | - | |
Cre09g1965 | 205 | ProSiteProfiles | AP2/ERF domain profile. | 46 | 103 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre09g1965 | 205 | SMART | rav1_2 | 46 | 109 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre09g1965 | Cre-Chr9:38577931 | Cre09g2209 | Cre-Chr9:41243439 | 6.80E-54 | dispersed | |
Cre09g1965 | Cre-Chr9:38577931 | Cre05g0963 | Cre-Chr5:8865376 | 4.30E-64 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
54414 | PF00847 | AP2 | 7.60E-15 | CL0081 | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre09g1965 | - | - | - | 0.0 |