Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g1965 ATGGATTTTTCCGATTCCTTTTCTTCCTCCCAACTTTGCCACCGCTCCAATCACTCCGACGAGGAGCTTCTTTTGGCGTCCCGATATCCGAAGAAGAGAGCTGGCAGAAAGAAGTTTAAGGAAACTCGCCACCCTATCTTCCGTGGGGTGCGACAGCGGAACTCCGGCAAGTGGGTTTGTGAAGTCAGAGAGCCCAATAAGAAGACTAGGATTTGGCTTGGCACTTTCCCCACTGCTGAGATGGCTGCTCGCGCTCACGATGTTGCTGCCATCGCTCTCCGTGGCCGCTCTGCTTGTCTTAATTTTGCTGACTCTGCCTCCACGCTTCCCGTTCCGGCTACTGTCGATCCTAAGGATATACAGAGGGCTGCGGCTCAGGCTGCAGACGCCTTCCGCCCTCCCGAGGATCGATTGAGGCCTGCCGTGGAGGCGGCGGAGGAGGAAGAGGTGTTTTATTTGGATGAGGAGGCGTTGTTTGGGATGCCGGGGTTGCTGGCGGATATGGCGGAGGCAATGCTGTTGCCGCCGCCCAATTGTGTGGGGAACGACAATGACGACTATGGGGTTAATTCTATGGATTTCGATGCCGACATGTCGTTGTGGAGTTACTCAATTTGA 618 54.85 MDFSDSFSSSQLCHRSNHSDEELLLASRYPKKRAGRKKFKETRHPIFRGVRQRNSGKWVCEVREPNKKTRIWLGTFPTAEMAARAHDVAAIALRGRSACLNFADSASTLPVPATVDPKDIQRAAAQAADAFRPPEDRLRPAVEAAEEEEVFYLDEEALFGMPGLLADMAEAMLLPPPNCVGNDNDDYGVNSMDFDADMSLWSYSI 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 38577931 38578548 - CrPI670011_09g019650.1 Cre09g1965 508633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g1965 205 CDD AP2 45 105 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre09g1965 205 Gene3D AP2/ERF domain 46 104 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre09g1965 205 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 5 203 IPR045277 GO:0003700(InterPro)
Cre09g1965 205 PRINTS Ethylene responsive element binding protein signature 69 85 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre09g1965 205 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre09g1965 205 Pfam AP2 domain 46 95 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre09g1965 205 SUPERFAMILY DNA-binding domain 46 105 IPR016177 GO:0003677(InterPro)
Cre09g1965 205 FunFam Ethylene-responsive transcription factor 2 45 104 - -
Cre09g1965 205 ProSiteProfiles AP2/ERF domain profile. 46 103 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre09g1965 205 SMART rav1_2 46 109 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre09g1965 Cre-Chr9:38577931 Cre09g2209 Cre-Chr9:41243439 6.80E-54 dispersed
Cre09g1965 Cre-Chr9:38577931 Cre05g0963 Cre-Chr5:8865376 4.30E-64 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54414 PF00847 AP2 7.60E-15 CL0081 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g1965 - - - 0.0