Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g1969 ATGGGGGCTTCATTTGCCAAACACTCCAATCTCCCTTCCTCTCCTTCCTCCTCCGATTCCTCTTCTCTGGAAGACATACCGGAAAATTGTATTTCCATTGTCTTCATGTACTTGGATCCTCCCGAGATTTGCAATCTTGCCTCTCTTAATCGCGCCTTTCGTGCTGCTTCTTCCGCTGATTTCGTTTGGGAATCCAAACTCCCTTCCAATTACAACTTCTTACTTCATCGAGTTCTTCATCCTCAATCGTGCCAGCCTAAGAAACACATCTTCGCTACCCTCACTCGCCCTTATCTCTTTGATCATGCCACCAAGGAGGTTTGGTTGGATAAAAGTTCTGGAAAAATTTTTGTTTCTATTTCATCCAAGGCTCTGAAGATTACAGGGATTGATGATAGAAGATATTGGAACTATATTCCAACTGATGAATCAAGGTTTGGGACAGTGGCATATTTGAAACAAATTTGGTGGGTTGAAATAGGAGGAGAATTGGAGTTTGAGTTACCTAAGGGAAGCTACAGTGTATATTTCAGGCTTCAATTGGGGAAAGCTTCAAAGAAATTTGGAAGAAGATTTGTAGATGTGGATCAAGTTCATGGATGGGAACTTAAGCCAGTGAGATTTGAAGTCTCAGTTTCCAATGCCCAAAAAGCTTCGTCTGAGTGTTATTTAAACCAATTTGGGAAATGGGTTTTGTATAAAGTGGGAGATTTTAGTGTTGAAACCCCTAATTTTGTAGCTCATATCAAATTTTCAATGATTCAAATTGATTGTACTCATACTAAAGGTGGCCTTTCTGTGGACTCTGTCTTCATTTCTCCCACTGATTTTAAGCCCACCTTCAAATGA 849 40.4 MGASFAKHSNLPSSPSSSDSSSLEDIPENCISIVFMYLDPPEICNLASLNRAFRAASSADFVWESKLPSNYNFLLHRVLHPQSCQPKKHIFATLTRPYLFDHATKEVWLDKSSGKIFVSISSKALKITGIDDRRYWNYIPTDESRFGTVAYLKQIWWVEIGGELEFELPKGSYSVYFRLQLGKASKKFGRRFVDVDQVHGWELKPVRFEVSVSNAQKASSECYLNQFGKWVLYKVGDFSVETPNFVAHIKFSMIQIDCTHTKGGLSVDSVFISPTDFKPTFK 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 38664491 38667041 - CrPI670011_09g019690.1 Cre09g1969 508637

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g1969 282 Pfam Phloem protein 2 118 274 IPR025886 -
Cre09g1969 282 Pfam F-box domain 23 60 IPR001810 GO:0005515(InterPro)
Cre09g1969 282 SUPERFAMILY F-box domain 19 120 IPR036047 GO:0005515(InterPro)
Cre09g1969 282 PANTHER F-BOX PROTEIN PP2-A15 15 278 - -
Cre09g1969 282 ProSiteProfiles F-box domain profile. 20 66 IPR001810 GO:0005515(InterPro)
Cre09g1969 282 MobiDBLite consensus disorder prediction 7 24 - -
Cre09g1969 282 CDD F-box_AtSKIP3-like 24 68 - -
Cre09g1969 282 MobiDBLite consensus disorder prediction 1 24 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g1969 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre09g1969 Cre-Chr9:38664491 Cre10g0618 Cre-Chr10:5730922 3.30E-83 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g604 Blo06g01114 . . . . Bpe07g00950 . . . . . . . . . . . . . . . . . . Cla01g00547 Cam01g0572 Cec01g0562 Cco01g0588 Clacu01g0566 Cmu01g0538 Cre09g1969 . . . . . Csa05g00583 Chy09g00923 . . . Bda06g00670 Bda15g00737 . Bpe12g00417 Bma08g00341 . . . . . . . . . . . . . . . . . . . . . . . . Lsi09g00591 . . Cme09g01452
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001664 6 3 1 3 3 2 3 2 2 2 2 2 2 2 2 3 2 3 3 2 2 2 2 2 2 2 1 3 2 2 70