Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g1977 ATGGGGAATTCATTTGGGTGTTCGGCGTCAGGAGAGAGATTGGTATCGGCTGCGAGAGATGGCGACTTGGTTGAGGCTAAAATGCTTTTAGATTGCAACCCATGTCTCGCTAAATACTCCACTTTCGGCGGCCTTAATTCCCCTCTCCATTTTGCGGCTGCTAAAGGTCACAACGAGATTGTGTCCTTATTGCTTGAAAATGGAGCTGATGTGAATTCCAGGAATTACTGTGGGCAGACAGCAGTGATGCAAGCTTGTCGATATGGGCACTGGGAAGTCGTACAAACTCTTCTAGTTTTCAGATGCAATGTAATGAGAGCAGACTACCTTAGCGGTCGGACTGCTCTCCATTTTGCTGCCGTAAATGGTCATGTGAGATGTCTAAGACTCATTGTGGCCGACTTTGTTCCTAGTGTTCCCTATGAGTCTATTAATAGTCAGACAGTTGTTAGCAGAGGCGATGGTGTAAATGTGAAGAACAGATGTGAACAAGGTGCTTTGTCCAAGTTTATAAATAAGGCAGCTGATGGTGGCATTACTGCTCTTCATATGGCAGCATTAAATGGATATTATGATTGTGTTCATCTTCTTCTTGACCTACATGCTAATGTTTCAGCCGTAACATTTCATTACGGGACCTCTATGGATTTGATAGGAGCTGGAAGCACTCCATTGCATTATGCAGCTTGTGGGGGTAATTTGAAGTGCTGTCAGATTCTCCTTGCAAGAGGTGCCTCTCGGATGACTTTGAATTGCAATGGGTGGCTTCCATTAGATGTAGCCAGAATGTGGGGACGCCACTGGCTTGAACCTCTGCTAGCTCCCAATTCTGACTCTATAATACCGAGATTCCCCACCTCTAACCACCTATCCTTGCCTCTACTGAGTGCATTAAACATTGCCAGAGAATGCGGTTTTAAGTCTATGGGAGCGACCTCTGATGATGGGGATACCTGTGCTGTCTGTCTGGAGAGAGTATGTTCCGTGGCAGCAGAGGGATGTGGACATGAGCTTTGTGTAAGATGTGCGCTCTATCTTTGTTCAACTAGCAATATCCAATCGGAAATGATTGGTTCATTGGGCTCAATTCCATGTCCGCTTTGCAGACACGGAATTATATCTTTTGTAAAATTGTCTGGTGTGACTGCAAAAGAAAAACAGCTTCATCTGTCTCTTAGCATATGCAGCCCATGCATTCTTCATACCCGTGATGCTGAAGATCATGCTTCAACTTGTACCCCAGAGATCCGTAAGAATCGTGTGGCTTCGGTTTCTTCAGATGTATTCTGCCCAGTAACTTGCAGTCCATTCCCTTCCGCAGCTATTCCTTTGTGTACGTGCAATGACGGTCCATGCCCGACATTCGAGTCCCGAGATGTCGGAACAGAAGACGAATCACCCCGTCAATCACAAACAACCCCAATAGACCAGGACAAATTGGGAGGTCCAAGGCCAGAAAGAACTAGCTGTTCAAGCATGTTTTGGGGCAGGAGAAGCTGTAGCAGGGAGAATCGATGCAATTCAGAGATAAATGCTTGA 1539 45.87 MGNSFGCSASGERLVSAARDGDLVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVSLLLENGADVNSRNYCGQTAVMQACRYGHWEVVQTLLVFRCNVMRADYLSGRTALHFAAVNGHVRCLRLIVADFVPSVPYESINSQTVVSRGDGVNVKNRCEQGALSKFINKAADGGITALHMAALNGYYDCVHLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHYAACGGNLKCCQILLARGASRMTLNCNGWLPLDVARMWGRHWLEPLLAPNSDSIIPRFPTSNHLSLPLLSALNIARECGFKSMGATSDDGDTCAVCLERVCSVAAEGCGHELCVRCALYLCSTSNIQSEMIGSLGSIPCPLCRHGIISFVKLSGVTAKEKQLHLSLSICSPCILHTRDAEDHASTCTPEIRKNRVASVSSDVFCPVTCSPFPSAAIPLCTCNDGPCPTFESRDVGTEDESPRQSQTTPIDQDKLGGPRPERTSCSSMFWGRRSCSRENRCNSEINA 512
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 38752250 38757219 + CrPI670011_09g019770.1 Cre09g1977 508645

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g1977 512 SUPERFAMILY RING/U-box 314 374 - -
Cre09g1977 512 SUPERFAMILY Ankyrin repeat 14 274 IPR036770 -
Cre09g1977 512 ProSiteProfiles Zinc finger RING-type profile. 319 369 IPR001841 -
Cre09g1977 512 ProSiteProfiles Ankyrin repeat profile. 177 209 IPR002110 GO:0005515(InterPro)
Cre09g1977 512 MobiDBLite consensus disorder prediction 458 490 - -
Cre09g1977 512 ProSiteProfiles Ankyrin repeat region circular profile. 44 75 - -
Cre09g1977 512 ProSiteProfiles Ankyrin repeat profile. 44 76 IPR002110 GO:0005515(InterPro)
Cre09g1977 512 Pfam Ankyrin repeat 178 208 IPR002110 GO:0005515(InterPro)
Cre09g1977 512 ProSiteProfiles Ankyrin repeat region circular profile. 220 246 - -
Cre09g1977 512 SMART ring_2 319 368 IPR001841 -
Cre09g1977 512 ProSiteProfiles Ankyrin repeat region circular profile. 177 206 - -
Cre09g1977 512 SMART ANK_2a 111 141 IPR002110 GO:0005515(InterPro)
Cre09g1977 512 SMART ANK_2a 77 106 IPR002110 GO:0005515(InterPro)
Cre09g1977 512 SMART ANK_2a 44 73 IPR002110 GO:0005515(InterPro)
Cre09g1977 512 SMART ANK_2a 177 206 IPR002110 GO:0005515(InterPro)
Cre09g1977 512 SMART ANK_2a 220 252 IPR002110 GO:0005515(InterPro)
Cre09g1977 512 FunFam E3 ubiquitin-protein ligase XBAT33 6 140 - -
Cre09g1977 512 ProSitePatterns Zinc finger RING-type signature. 334 343 IPR017907 -
Cre09g1977 512 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 305 378 IPR013083 -
Cre09g1977 512 PANTHER HOMEOBOX PROTEIN WARIAI 10 398 - -
Cre09g1977 512 ProSiteProfiles Ankyrin repeat region circular profile. 111 132 - -
Cre09g1977 512 ProSiteProfiles Ankyrin repeat profile. 111 132 IPR002110 GO:0005515(InterPro)
Cre09g1977 512 Pfam Ankyrin repeats (3 copies) 49 132 IPR002110 GO:0005515(InterPro)
Cre09g1977 512 Pfam Ankyrin repeats (3 copies) 220 268 IPR002110 GO:0005515(InterPro)
Cre09g1977 512 Gene3D - 8 135 IPR036770 -
Cre09g1977 512 Gene3D - 146 270 IPR036770 -
Cre09g1977 512 ProSiteProfiles Ankyrin repeat profile. 220 252 IPR002110 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g1977 K19044 - - vvi:100252095 902.123
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g2328 Cre-Chr2:36755605 Cre09g1977 Cre-Chr9:38752250 1.70E-26 dispersed
Cre06g2159 Cre-Chr6:29414415 Cre09g1977 Cre-Chr9:38752250 2.00E-91 dispersed
Cre09g1977 Cre-Chr9:38752250 Cre11g1691 Cre-Chr11:28371898 5.20E-111 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g617 Blo06g01115 . . . . . . . . . Cma02g01040 . Car02g00785 . . Cpe05g00681 . . . . . . . . Cla01g00540 Cam01g0564 Cec01g0554 Cco01g0579 Clacu01g0560 Cmu01g0532 Cre09g1977 . . . . . Csa05g00574 Chy09g00931 . . . . Bda15g00735 . Bpe12g00419 Bma08g00340 . . Cmo02g01055 . . . . . . Cpe13g00045 . . . . . . . . . . . . . . Lsi09g00584 . . Cme09g01458
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006256 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 38