Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g1990 ATGTCTTCTACTCCAATTCTCTCTCTCCCTCTCACTCTTAAGCCTTCTCATTTCCCCAATCACACTCTCAAACTTCCCAATTCCTCTCACTCCCTGCTCCGCCCATCAACTTCCTTCGCGCCATTTTCGACTCCACCACCTCTCAAGCCCTTTAATGGTTCAATCAAAACTAGTAGCAATTCTACTTTCGCCTATGTCACGGGCCCTGCGTCGGACCCTAATGTCAGCGAGTCTGACCCCAAGGTGGACGACGCCTCCGATTCTCAGGTTCGGGTTGTTGGGGTCTTGAATTGGGGGCTCTTCTGGAGGCTTTTGACCAAGCATAAGCTACGGCTTCTAGTTTCTTTGCTTACTCTTGTTTGCTGCACTACTTGTACTCTTTCAATGCCCTTTTTCTCTGGTAGATTTTTTGAGGTACTTATAGGTGCGAAACCTGGGTCTCTGTGGAGGCTTCTGAGTACGGTTGGAATTTTATATGCATTGGAGCCAATATTAACGGTTTTATTTGTCACAAACATGAATTTCATGTGGGAGAAGGTTATGTCAAGATTAAGAGCCCAGATTTTTGGAAGGTTGCTGATTCAGAAAGTGGAATTCTTTGACAGATACAAGGTTGGTGAAATTACCGGATTGTTAACTTCTGATTTGGGATCTCTTAAGGATGTGGTGAGTGAGAATGTTTCAAGGGACCGTGGATTCAGAGCGTTCTCAGAGGTGATTGGAACAATATGTATATTATTTGCTTTGTCCCCCCAGCTTGCACCTATTCTTGGCCTGCTGATGCTTACAGTATCTGTTTCAGTGGCTGTATACAAGCGATCAACTATTCCTGTATTTAAAGCACATGGATTAGCCCAAGCATCCATGGCTGATTGTGCAACTGAGACATTCTCTGCAATTCGTACTGTGAGATCCTTTGGCGGTGAAAAGCGTCAAATGTTCAATTTTGGTCGTCAGGTTATTGCATATGAGGGTAGTGGCATATCACTTGGGACTTATAAATCTCTGAATGAATCTTTAACTAGAGTTGCTGTTTATGTTTCGCTTATGACATTATATTGGCTTGGAGGAGACAAAGTGAAAGCGGGTGAACTTTCTGTTGGAACCATGGCTTCTTTTATTGGATATACTTTCACGTTAACATTTTCTGTTCAAGGATTGGTAAATTCATTTGGAGATCTCCGCCGAACTTTTGCTGCTGTTGAAAGAATTAATTCTGTTTTAAATGAAGAGGTTGATGAAGCCCTTGCATATGGGTTAGAAAAAGAGATGCAACAAAAAGAATTTAGATATAAGTTGCTATTCTCCAGCGATACTGATGAAAATAGTCAAGTGAAAACACAGTACATGGCAGCCCTAAAATCTTCTAGCAACGTTATCAATCTTGCTTGGTCTGGTGATATTTGTCTTGAAGATGTGTGCTTTTCTTATCCTTTGAGACCGGATGTTGACATTCTTAGCGGTTTGAATTTAACCCTTAAATGTGGAACCATAACGGCGCTAGTGGGCCCTAGTGGAGCAGGAAAGAGTACAATAGTGCAGCTATTGGCACGTTTTTATGAGCCAAAGAAAGGGCAGATAAAAGTTTCTGGTGAAGATATTCGAGCATTTGACAAGAGAGAATGGGCTCGGGCTGTTTCAATAGTGAATCAAGAACCTGTTCTTTTTTCGGTGTCTGTTGGAGAGAATATTGCATATGGACTTCCAGATGATAACGTAACAAAGGATGAAGTTATAAAGGCAGCCAAAGCTGCAAACGCTCATGACTTCATTATTTCACTTCCTCAGGGCTATGACACACCAGTTGGTGAACGCGGAGGCCTTCTCAGTGGTGGCCAGCGACAGAGAATTACAATTGCGAGAGCTTTGCTTAAGAATGCTCCAATCCTTATACTTGATGAGGCGACCAGTGCCCTAGATGCAGTTAGTGAGCGACTGGTCCAGGACGCTCTAAACCATCTAATGAAGGGAAGGACGACATTGGTGATTGCACACCGATTGAGTACCGTTCAAAATGCCCATCAAATTGCATTTTGTTCTGATGGAAAAATTGTAGAGCTGGGAACTCATTTGGAACTACTGGCTCGGAAAGGTCGGTATGCTTCATTAGTTAGCACACAAAGGCTGGCATTTGAGTAA 2139 42.82 MSSTPILSLPLTLKPSHFPNHTLKLPNSSHSLLRPSTSFAPFSTPPPLKPFNGSIKTSSNSTFAYVTGPASDPNVSESDPKVDDASDSQVRVVGVLNWGLFWRLLTKHKLRLLVSLLTLVCCTTCTLSMPFFSGRFFEVLIGAKPGSLWRLLSTVGILYALEPILTVLFVTNMNFMWEKVMSRLRAQIFGRLLIQKVEFFDRYKVGEITGLLTSDLGSLKDVVSENVSRDRGFRAFSEVIGTICILFALSPQLAPILGLLMLTVSVSVAVYKRSTIPVFKAHGLAQASMADCATETFSAIRTVRSFGGEKRQMFNFGRQVIAYEGSGISLGTYKSLNESLTRVAVYVSLMTLYWLGGDKVKAGELSVGTMASFIGYTFTLTFSVQGLVNSFGDLRRTFAAVERINSVLNEEVDEALAYGLEKEMQQKEFRYKLLFSSDTDENSQVKTQYMAALKSSSNVINLAWSGDICLEDVCFSYPLRPDVDILSGLNLTLKCGTITALVGPSGAGKSTIVQLLARFYEPKKGQIKVSGEDIRAFDKREWARAVSIVNQEPVLFSVSVGENIAYGLPDDNVTKDEVIKAAKAANAHDFIISLPQGYDTPVGERGGLLSGGQRQRITIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIAFCSDGKIVELGTHLELLARKGRYASLVSTQRLAFE 712
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 38884587 38891689 - CrPI670011_09g019900.1 Cre09g1990 508658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g1990 712 Pfam ABC transporter transmembrane region 112 383 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cre09g1990 712 Gene3D - 466 709 IPR027417 -
Cre09g1990 712 ProSitePatterns ABC transporters family signature. 609 623 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Cre09g1990 712 SMART AAA_5 495 689 IPR003593 GO:0016887(InterPro)
Cre09g1990 712 Pfam ABC transporter 486 637 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cre09g1990 712 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 93 708 IPR039421 GO:0005743(PANTHER)|GO:0015421(PANTHER)|GO:0090374(PANTHER)
Cre09g1990 712 Gene3D ABC transporter type 1, transmembrane domain 97 414 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cre09g1990 712 CDD ABC_MTABC3_MDL1_MDL2 468 707 - -
Cre09g1990 712 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 459 707 IPR027417 -
Cre09g1990 712 CDD ABC_6TM_TAP_ABCB8_10_like 120 404 - -
Cre09g1990 712 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 113 396 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cre09g1990 712 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 468 706 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cre09g1990 712 FunFam ATP-binding cassette sub-family B member 8, mitochondrial 466 710 - -
Cre09g1990 712 SUPERFAMILY ABC transporter transmembrane region 101 413 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre09g1990 Cre-Chr9:38884587 Cre11g1754 Cre-Chr11:29185933 6.40E-75 dispersed
Cre05g0358 Cre-Chr5:3268146 Cre09g1990 Cre-Chr9:38884587 3.90E-21 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g1990 K05657 - csv:101211598 1249.57