Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre09g1990 | ATGTCTTCTACTCCAATTCTCTCTCTCCCTCTCACTCTTAAGCCTTCTCATTTCCCCAATCACACTCTCAAACTTCCCAATTCCTCTCACTCCCTGCTCCGCCCATCAACTTCCTTCGCGCCATTTTCGACTCCACCACCTCTCAAGCCCTTTAATGGTTCAATCAAAACTAGTAGCAATTCTACTTTCGCCTATGTCACGGGCCCTGCGTCGGACCCTAATGTCAGCGAGTCTGACCCCAAGGTGGACGACGCCTCCGATTCTCAGGTTCGGGTTGTTGGGGTCTTGAATTGGGGGCTCTTCTGGAGGCTTTTGACCAAGCATAAGCTACGGCTTCTAGTTTCTTTGCTTACTCTTGTTTGCTGCACTACTTGTACTCTTTCAATGCCCTTTTTCTCTGGTAGATTTTTTGAGGTACTTATAGGTGCGAAACCTGGGTCTCTGTGGAGGCTTCTGAGTACGGTTGGAATTTTATATGCATTGGAGCCAATATTAACGGTTTTATTTGTCACAAACATGAATTTCATGTGGGAGAAGGTTATGTCAAGATTAAGAGCCCAGATTTTTGGAAGGTTGCTGATTCAGAAAGTGGAATTCTTTGACAGATACAAGGTTGGTGAAATTACCGGATTGTTAACTTCTGATTTGGGATCTCTTAAGGATGTGGTGAGTGAGAATGTTTCAAGGGACCGTGGATTCAGAGCGTTCTCAGAGGTGATTGGAACAATATGTATATTATTTGCTTTGTCCCCCCAGCTTGCACCTATTCTTGGCCTGCTGATGCTTACAGTATCTGTTTCAGTGGCTGTATACAAGCGATCAACTATTCCTGTATTTAAAGCACATGGATTAGCCCAAGCATCCATGGCTGATTGTGCAACTGAGACATTCTCTGCAATTCGTACTGTGAGATCCTTTGGCGGTGAAAAGCGTCAAATGTTCAATTTTGGTCGTCAGGTTATTGCATATGAGGGTAGTGGCATATCACTTGGGACTTATAAATCTCTGAATGAATCTTTAACTAGAGTTGCTGTTTATGTTTCGCTTATGACATTATATTGGCTTGGAGGAGACAAAGTGAAAGCGGGTGAACTTTCTGTTGGAACCATGGCTTCTTTTATTGGATATACTTTCACGTTAACATTTTCTGTTCAAGGATTGGTAAATTCATTTGGAGATCTCCGCCGAACTTTTGCTGCTGTTGAAAGAATTAATTCTGTTTTAAATGAAGAGGTTGATGAAGCCCTTGCATATGGGTTAGAAAAAGAGATGCAACAAAAAGAATTTAGATATAAGTTGCTATTCTCCAGCGATACTGATGAAAATAGTCAAGTGAAAACACAGTACATGGCAGCCCTAAAATCTTCTAGCAACGTTATCAATCTTGCTTGGTCTGGTGATATTTGTCTTGAAGATGTGTGCTTTTCTTATCCTTTGAGACCGGATGTTGACATTCTTAGCGGTTTGAATTTAACCCTTAAATGTGGAACCATAACGGCGCTAGTGGGCCCTAGTGGAGCAGGAAAGAGTACAATAGTGCAGCTATTGGCACGTTTTTATGAGCCAAAGAAAGGGCAGATAAAAGTTTCTGGTGAAGATATTCGAGCATTTGACAAGAGAGAATGGGCTCGGGCTGTTTCAATAGTGAATCAAGAACCTGTTCTTTTTTCGGTGTCTGTTGGAGAGAATATTGCATATGGACTTCCAGATGATAACGTAACAAAGGATGAAGTTATAAAGGCAGCCAAAGCTGCAAACGCTCATGACTTCATTATTTCACTTCCTCAGGGCTATGACACACCAGTTGGTGAACGCGGAGGCCTTCTCAGTGGTGGCCAGCGACAGAGAATTACAATTGCGAGAGCTTTGCTTAAGAATGCTCCAATCCTTATACTTGATGAGGCGACCAGTGCCCTAGATGCAGTTAGTGAGCGACTGGTCCAGGACGCTCTAAACCATCTAATGAAGGGAAGGACGACATTGGTGATTGCACACCGATTGAGTACCGTTCAAAATGCCCATCAAATTGCATTTTGTTCTGATGGAAAAATTGTAGAGCTGGGAACTCATTTGGAACTACTGGCTCGGAAAGGTCGGTATGCTTCATTAGTTAGCACACAAAGGCTGGCATTTGAGTAA | 2139 | 42.82 | MSSTPILSLPLTLKPSHFPNHTLKLPNSSHSLLRPSTSFAPFSTPPPLKPFNGSIKTSSNSTFAYVTGPASDPNVSESDPKVDDASDSQVRVVGVLNWGLFWRLLTKHKLRLLVSLLTLVCCTTCTLSMPFFSGRFFEVLIGAKPGSLWRLLSTVGILYALEPILTVLFVTNMNFMWEKVMSRLRAQIFGRLLIQKVEFFDRYKVGEITGLLTSDLGSLKDVVSENVSRDRGFRAFSEVIGTICILFALSPQLAPILGLLMLTVSVSVAVYKRSTIPVFKAHGLAQASMADCATETFSAIRTVRSFGGEKRQMFNFGRQVIAYEGSGISLGTYKSLNESLTRVAVYVSLMTLYWLGGDKVKAGELSVGTMASFIGYTFTLTFSVQGLVNSFGDLRRTFAAVERINSVLNEEVDEALAYGLEKEMQQKEFRYKLLFSSDTDENSQVKTQYMAALKSSSNVINLAWSGDICLEDVCFSYPLRPDVDILSGLNLTLKCGTITALVGPSGAGKSTIVQLLARFYEPKKGQIKVSGEDIRAFDKREWARAVSIVNQEPVLFSVSVGENIAYGLPDDNVTKDEVIKAAKAANAHDFIISLPQGYDTPVGERGGLLSGGQRQRITIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIAFCSDGKIVELGTHLELLARKGRYASLVSTQRLAFE | 712 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 38884587 | 38891689 | - | CrPI670011_09g019900.1 | Cre09g1990 | 508658 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre09g1990 | 712 | Pfam | ABC transporter transmembrane region | 112 | 383 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
Cre09g1990 | 712 | Gene3D | - | 466 | 709 | IPR027417 | - | |
Cre09g1990 | 712 | ProSitePatterns | ABC transporters family signature. | 609 | 623 | IPR017871 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
Cre09g1990 | 712 | SMART | AAA_5 | 495 | 689 | IPR003593 | GO:0016887(InterPro) | |
Cre09g1990 | 712 | Pfam | ABC transporter | 486 | 637 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
Cre09g1990 | 712 | PANTHER | ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL | 93 | 708 | IPR039421 | GO:0005743(PANTHER)|GO:0015421(PANTHER)|GO:0090374(PANTHER) | |
Cre09g1990 | 712 | Gene3D | ABC transporter type 1, transmembrane domain | 97 | 414 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
Cre09g1990 | 712 | CDD | ABC_MTABC3_MDL1_MDL2 | 468 | 707 | - | - | |
Cre09g1990 | 712 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 459 | 707 | IPR027417 | - | |
Cre09g1990 | 712 | CDD | ABC_6TM_TAP_ABCB8_10_like | 120 | 404 | - | - | |
Cre09g1990 | 712 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 113 | 396 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
Cre09g1990 | 712 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 468 | 706 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
Cre09g1990 | 712 | FunFam | ATP-binding cassette sub-family B member 8, mitochondrial | 466 | 710 | - | - | |
Cre09g1990 | 712 | SUPERFAMILY | ABC transporter transmembrane region | 101 | 413 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre09g1990 | Cre-Chr9:38884587 | Cre11g1754 | Cre-Chr11:29185933 | 6.40E-75 | dispersed | |
Cre05g0358 | Cre-Chr5:3268146 | Cre09g1990 | Cre-Chr9:38884587 | 3.90E-21 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre09g1990 | K05657 | - | csv:101211598 | 1249.57 |