Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g1993 ATGGTTCGAGGAAAAGTAGAGATGAAACGAATTGAAAATTCGACAAGCCGTCAAGTGACATTCTCAAAGAGACGAAATGGGCTTCTGAAAAAAGCTTATGAATTGTCTGTTCTTTGTGATGCTGAAGTTTCTGTCATAATTTTCTCCCAAAAAGGAAGGCTCTATGAGTTCTCAAGCTCCGACATGCAAAAGACGATTGAACGTTACCGTAGCTATGGGAAAGATGGACAAACCAACCCTTTTCGATCAGAAGGATATATGCAGCAACTAAAGCAAGAAGCTGACATGACTGCAAAGAAAATCGAGCAACTTGAAAAATCACAAGAGAAGCTTTTGGGACGTGGGTTGGATTCTTGTTCCTTTGAGGAACTTCGAGGGATTGAAAGACAGTTGGTACATAGCTTAACCCGTATTAGAGAAACCAAGGCTCAGCTATTCAAGGAGCAGAAAGAGAAGCTGATTGAAAAGGGGAAACTTCTTTTAGAAGAAAATCTAAAGTTATCTGCAAAGTGTGGTACTAAGCCGTGGCAAGAAGGTGGTTTTGAAGGAGAGGGAGGCATAATGAGTAATTTATGCAGCCAAAGTAGCCAAGGTCCTGACATGCAGACTGAATTGTTCATTGGATTGCCTTGCTCATAA 639 41.0 MVRGKVEMKRIENSTSRQVTFSKRRNGLLKKAYELSVLCDAEVSVIIFSQKGRLYEFSSSDMQKTIERYRSYGKDGQTNPFRSEGYMQQLKQEADMTAKKIEQLEKSQEKLLGRGLDSCSFEELRGIERQLVHSLTRIRETKAQLFKEQKEKLIEKGKLLLEENLKLSAKCGTKPWQEGGFEGEGGIMSNLCSQSSQGPDMQTELFIGLPCS 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 38924767 38938819 + CrPI670011_09g019930.1 Cre09g1993 508661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g1993 212 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre09g1993 212 Coils Coil 87 107 - -
Cre09g1993 212 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre09g1993 212 Pfam K-box region 88 171 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cre09g1993 212 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre09g1993 212 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre09g1993 212 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cre09g1993 212 SUPERFAMILY SRF-like 3 78 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre09g1993 212 Gene3D - 13 107 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre09g1993 212 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre09g1993 212 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre09g1993 212 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre09g1993 212 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cre09g1993 212 FunFam Agamous-like MADS-box protein AGL13 13 78 - -
Cre09g1993 212 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 192 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre09g1993 Cre-Chr9:38924767 Cre09g2199 Cre-Chr9:41090544 7.10E-46 dispersed
Cre09g1993 Cre-Chr9:38924767 Cre05g0953 Cre-Chr5:8784216 8.60E-52 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54415 PF01486 K-box 2.80E-20 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g1993 - - - 0.0