Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g2005 ATGTCCGAATCATCTCCCTCCCATCATAATCCCTCTCCCTCTGCTGCCAAGCTCCGCAAGATCCCTCCCATCCCCATTCGGCGCGATTCCATACCCAATGCCGGAGACTCCGATTCTGATCATGAAAACGATCCTCCCGAGGATCAATCTCTTCAACCTGACGATTCCTCCATCATTATGGCCTCCTCTCTTGGGTTGAATCACATTCGTACGCGTTCTGCTCCTTTGCCGTTACGAACCTCTGCTGTTGGCACGCCCTCCAATTTGGGAGATAATTCTAGAAATAATGTTGTCTCCAGTGAGACCGAGTCCGAGCCAAAAGTTTCCTCCATTGAACAAGGAAAAAAAGTTCTGTGGAGTCAATCGAAATCGTTCAGATATCCTACATCTCTGAATCATGATCTTGAGGGCAATCATGTAGCGTTTGGAAAGGAAATTCAGTCTCCACGGTTCCGTGCCATACTGCGTGTAACTAGTGGAAGAAGGAGGAGAACCCCGGATATCAAAAGCTTCTCTCACGAGCTCAATTCCAAGGGAGTTCGCCCTTTTCCACTTTGGAAACCTCGGGCATTTGGGCATTTGGAAGAGATCATGGTGGCTATCAGAGCAAAATTTGACAGATTGAAGGATGATGTTAATTACGAATTGGGCATTTTTGCTGGAGATCTCGTAGATATACTTGAAAAGACAGACCAGTCTCAGCCTGAACTAAAAGAGGGTTTGGAGGACTTATTGGTGGTTGCTCGGAAATGTGCGACAATGTCACCTACTGAATTCTGGACGAAAGGTGAAGGGATTGTCCAAAATCTAGACGATCGGCGGCAGGAGCTGTCGTTAGGGATTCTTAAGCAAACCCATACCCGCCTTCTCTTCATCTTGACACGATGTACTCGGCTTATTCAGTTCAGAAAGGAGAGTGGTTATGAAGATGAACACATTTTGGGTCTTCATCAACTTAGTGATCTAGGAATTTATCCAGAGAAACTTAGGCAGCTCGAACAACTTGACTTTAGTGATCCATTGATTGTGAAAGAAGAAATTGAGCAGCAGCTAAAGTTGGTTGGTAAGGATCAAGCCAGTCGACTGGTGAAGCAAGATTTAGGCCAAAGTTTTAGTACTAGTGCTGGAAATGTCGAGCTGGACTCTTCCTTAAGTGTTGATTCATCTACAAGCATGTATAGGATGGCATCCTGGAAAAAGCTACCATCAGCAGCTGAGAAGAACCGGAAAGACTCTGACTCCACTGGAACACCTTCCAAGGATAAACTTGAACTGTTGCATGTACATGAAGCTAAGACCGGGAGCAATAACCAATTAGATACCCCATCTAGTCATATTGCGCATTCAGAAGCACCTCCTAAAGAACAAAAAGTATCTTGGGGAATATGGGGTTTTCATCAAAATGCCACTTTTGAGAATTTGATGATTTGTCGGATTTGTGAGGTTGAAATTCCGACCATTCATGTTGAGGAGCATTCTCGAATATGTACAATTGCCGATAGGTGTGATTTGAAAGGTTTAACTGTGAATGAGCGCCTTGAACGGGTTGCTACAGCTCTTGAAAAGATACTAGAGTCTTGGACGCCTAAAAGTACACCAAGAAGTTGTGATACTTCATGTGGAAATTTTGATACCGTCAAGGTTTCTACATCAAGTATGCAAGAAGAGGTTTTTGAGCTGTCATCTAAAGGAATCAATTTGTCAAGTCGAAACTCTGAAGATCTGCTTGATTCCCTCCCTGTTACTGGCAACTCCTCCTTCATGGAAAGTCAGGATATTTTTCCTGATTCATCAGACAATCGACCATTTATTTTCACACCAGATCACAGTACAAAATCAACGTCAGCTGGAACTCTAACACCAAGATCACCTCTTTTAACACCCAGATCCAGCCAGATTGAATTGTTGTTGCATGGACGAAGAGCAATATCTGAACTTGAAAATTATCAGCAGATTTACAAATTATTGGATATTGTTCGTTCCATTGCAAATGTTAACAACTCTGGATACGGTGCATTGGAGTCCATGCTTGATCGATTAGAGGACCTTAAATATGCAATCCAGGACAGGAAGGTGGATGCCCTTGTTGTGGAGACTTTTGGAAGGCGCATAGAGAAGCTCTTGCAGGAAAAATATGTGCATCTCTGTGGGCAAATTGAAGATGATAAAGTAGACTCTTCACATGGCATGGTTGATGAAGAGAGTTCAGTGGAAGATGATACTGTTCGTAGTTTGCGTGCAAGTCCTGTTAATACATCAAAAGATCGAACATCTATTGAAGATTTTGAAATAATTAAACCAATTAGTAGAGGGGCATATGGCCGAGTTTTTCTTGCCAGAAAAAGAGCAACTGGAGACTTGTTTGCAATAAAGGTTTTAAAGAAGGCTGATATGATTCGCAAGAATGCAGTTGAAAGTATTTTGGCTGAACGTAATATCCTTATCTCAGTTCGCAACCCTTTTGTGGTCCGCTTTTTCTACTCTTTCACATGTAGGGAAAATCTGTATCTGGTCATGGAATACTTAAATGGAGGTGATATTTATTCCTTGCTGAGAAACCTAGGGTGCTTAGATGAAGATATGGCTCGTATTTATATCGCTGAAATTGTTCTTGCTTTGGAGTATTTGCACTCCTTAAATGTGATTCACAGAGACTTAAAGCCAGATAACTTATTGATTGGTCAAGACGGTCACATTAAGTTGACAGATTTTGGGCTCTCCAAGATTGGTCTTATCAATAGTACAGATGATTTCTCAGGTCCATCAATCAGTGGAACTTCTTCACTTGGAGACAATGGACCAACATCTCAATCTTTGTCAAAAAGAGAACACAGACAAAAGCATTCAGTGGTTGGTACTCCAGATTATTTGGCTCCTGAGATACTTCTGGGCATGGGACATGGTGTAACTGCGGATTGGTGGTCTGTTGGAGTAATTCTTTTTGAGATGCTTGTAGGAATACCGCCGTTCAATGCAGAAAATCCACAGCAAATTTTTGATAATATCATTAACAGAGACATACCGTGGCCCAAGGTGCCTGACGAGATGAGTTATGAAGCCCATGATTTGATTGACAAATTGTTGACTGAAAATTCAGTTCAAAGACTGGGAGCTACTGGAGCCAGAGAGGTGAAGGAACATCCTTTCTTCAAAGATATTAACTGGGAAACACTTGCAAGGCAGAAGGCCATGTTTATACCATCAGCAGAGCCACAGGATACAAGTTATTTCATGAGCCGTTATATATGGAATCCAGAAGATGAGGATTTTAATGGTGGAAGTGACTTTGATGATCATGATTTGACTGATACTTGCAGCAGTAGTTCATTTAGTAACCTACAAGATGAAGACGGAGACGAATGTGGTAGTTTGGCTGACTTCTGTACATCAGCCCTTTCTGTGAAGTACTCGTTCAGCAATTTCTCTTTCAAGAATTTATCACAACTGGCTTCCATCAATTATGATTTGGTTGTGAAGAGCAGTCAAAACTCACCAGATGTATCAAAACCATCCATTCCTTGA 3522 41.96 MSESSPSHHNPSPSAAKLRKIPPIPIRRDSIPNAGDSDSDHENDPPEDQSLQPDDSSIIMASSLGLNHIRTRSAPLPLRTSAVGTPSNLGDNSRNNVVSSETESEPKVSSIEQGKKVLWSQSKSFRYPTSLNHDLEGNHVAFGKEIQSPRFRAILRVTSGRRRRTPDIKSFSHELNSKGVRPFPLWKPRAFGHLEEIMVAIRAKFDRLKDDVNYELGIFAGDLVDILEKTDQSQPELKEGLEDLLVVARKCATMSPTEFWTKGEGIVQNLDDRRQELSLGILKQTHTRLLFILTRCTRLIQFRKESGYEDEHILGLHQLSDLGIYPEKLRQLEQLDFSDPLIVKEEIEQQLKLVGKDQASRLVKQDLGQSFSTSAGNVELDSSLSVDSSTSMYRMASWKKLPSAAEKNRKDSDSTGTPSKDKLELLHVHEAKTGSNNQLDTPSSHIAHSEAPPKEQKVSWGIWGFHQNATFENLMICRICEVEIPTIHVEEHSRICTIADRCDLKGLTVNERLERVATALEKILESWTPKSTPRSCDTSCGNFDTVKVSTSSMQEEVFELSSKGINLSSRNSEDLLDSLPVTGNSSFMESQDIFPDSSDNRPFIFTPDHSTKSTSAGTLTPRSPLLTPRSSQIELLLHGRRAISELENYQQIYKLLDIVRSIANVNNSGYGALESMLDRLEDLKYAIQDRKVDALVVETFGRRIEKLLQEKYVHLCGQIEDDKVDSSHGMVDEESSVEDDTVRSLRASPVNTSKDRTSIEDFEIIKPISRGAYGRVFLARKRATGDLFAIKVLKKADMIRKNAVESILAERNILISVRNPFVVRFFYSFTCRENLYLVMEYLNGGDIYSLLRNLGCLDEDMARIYIAEIVLALEYLHSLNVIHRDLKPDNLLIGQDGHIKLTDFGLSKIGLINSTDDFSGPSISGTSSLGDNGPTSQSLSKREHRQKHSVVGTPDYLAPEILLGMGHGVTADWWSVGVILFEMLVGIPPFNAENPQQIFDNIINRDIPWPKVPDEMSYEAHDLIDKLLTENSVQRLGATGAREVKEHPFFKDINWETLARQKAMFIPSAEPQDTSYFMSRYIWNPEDEDFNGGSDFDDHDLTDTCSSSSFSNLQDEDGDECGSLADFCTSALSVKYSFSNFSFKNLSQLASINYDLVVKSSQNSPDVSKPSIP 1173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 39116551 39127351 - CrPI670011_09g020050.1 Cre09g2005 508673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g2005 1173 Gene3D Phosphorylase Kinase; domain 1 760 1077 - -
Cre09g2005 1173 MobiDBLite consensus disorder prediction 1 54 - -
Cre09g2005 1173 MobiDBLite consensus disorder prediction 923 937 - -
Cre09g2005 1173 PANTHER SERINE/THREONINE-PROTEIN KINASE 471 1145 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
Cre09g2005 1173 MobiDBLite consensus disorder prediction 33 48 - -
Cre09g2005 1173 ProSitePatterns Serine/Threonine protein kinases active-site signature. 881 893 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre09g2005 1173 MobiDBLite consensus disorder prediction 433 452 - -
Cre09g2005 1173 MobiDBLite consensus disorder prediction 923 948 - -
Cre09g2005 1173 CDD STKc_MAST_like 768 1055 - -
Cre09g2005 1173 FunFam probable serine/threonine protein kinase IREH1 760 849 - -
Cre09g2005 1173 Gene3D Transferase(Phosphotransferase) domain 1 846 1068 - -
Cre09g2005 1173 SMART serkin_6 762 1050 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre09g2005 1173 MobiDBLite consensus disorder prediction 78 107 - -
Cre09g2005 1173 ProSiteProfiles Protein kinase domain profile. 762 1050 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre09g2005 1173 MobiDBLite consensus disorder prediction 77 109 - -
Cre09g2005 1173 ProSiteProfiles AGC-kinase C-terminal domain profile. 1051 1153 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre09g2005 1173 Pfam Protein kinase domain 763 1050 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre09g2005 1173 SUPERFAMILY Protein kinase-like (PK-like) 759 1080 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1617 Cre-Chr1:29238141 Cre09g2005 Cre-Chr9:39116551 5.10E-154 dispersed
Cre01g1619 Cre-Chr1:29272536 Cre09g2005 Cre-Chr9:39116551 7.50E-67 dispersed
Cre06g2529 Cre-Chr6:32935047 Cre09g2005 Cre-Chr9:39116551 2.70E-61 dispersed
Cre09g0757 Cre-Chr9:7413606 Cre09g2005 Cre-Chr9:39116551 1.90E-69 dispersed
Cre09g2005 Cre-Chr9:39116551 Cre10g1529 Cre-Chr10:29217918 5.70E-44 dispersed
Cre09g2005 Cre-Chr9:39116551 Cre03g1807 Cre-Chr3:34920700 4.30E-68 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64423 PF00069 Pkinase 4.80E-64 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g2005 K08789 - csv:101210442 2082.37