Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g2014 ATGGAAGAGAAAGAGGGAGGAGTGGATTTCGGGTTTGCAGTAAAAGTGAGCCAAGCTCCAGAGAGCTTCGGGATGATGGATTCGAGACCTGAAAATTCAAGCACAGATGGTGACACGCCGCCGCCGCAGCCGCCGGCGAGTGTTCCGACGGCGGGGGCTACAGATGGGAAGAAGAAAAGAGGGAGACCGAGAAAGTACGGTCCCGATGGGACTGTAGCTCCAACATTGTCACCAATGCCGATTTCGTCATCGATTCCACTGACCGGAGAATTTCCGGGTTGGAAACGGGGAAGAGGGCGGTCAGTAGAGTCGATTAAGAAGTCGCGGAAGTTCGAGTATGAGATTCCAGGTAACAAGGTTGCCTTCTTTGCTGGAGCAGATTTCACACCTCACGTGATCACTGTTAATATTGGTGAGGATGTTAACTTGAAAGTTATGTCATTTTCTCAACAAGGATCTCGGGCGATTTGTATACTCTCTGCTAATGGTATGGTTTCAAATGTTACACTTCGGCAGTCAACATCTTCTGGGGGTACTTTGACATATGAGGGTCGATTTGAGATACTTTCATTGTCTGGATCATATATGCCTTCTGAGATTGGTGGAACAAAGAGCCGATCTGGAGGGATGAGTGTCTCTTTGGCTGGCCCAGATGGCCGGGTGATGGGTGGAGGACTTGCCGGCATGCTGATAGCAGCTGGTCCAGTGCAGGTGGTGGTGGGTAGTTTCCTGCCACCAGGTCACCAGCAGGAAAACAAACCAAAGAAGAATAGGATGGAGCCTACATCGAACACAATTTTGCCTCCCGCCAATGTTCTTTCTGGCGAAGGGACGAAGGAAGTATTTGGAGGAGTGAAGCCCGTAGTTGCATCAACTCTAATTGGAGATAAAGCAGCTTCTTTAGACCAAACTTCAGCTTTTAAGACTTCACAAGTCAACGACAAATCACCTTTTCTACAAGAATCAAGAGATTTGCTGGTGCTTTGGCTTTTCCTCAACCTCGATCATCAGCAGTATGAGCTCATTGATTCTTTAAAGGGCTAA 1044 48.28 MEEKEGGVDFGFAVKVSQAPESFGMMDSRPENSSTDGDTPPPQPPASVPTAGATDGKKKRGRPRKYGPDGTVAPTLSPMPISSSIPLTGEFPGWKRGRGRSVESIKKSRKFEYEIPGNKVAFFAGADFTPHVITVNIGEDVNLKVMSFSQQGSRAICILSANGMVSNVTLRQSTSSGGTLTYEGRFEILSLSGSYMPSEIGGTKSRSGGMSVSLAGPDGRVMGGGLAGMLIAAGPVQVVVGSFLPPGHQQENKPKKNRMEPTSNTILPPANVLSGEGTKEVFGGVKPVVASTLIGDKAASLDQTSAFKTSQVNDKSPFLQESRDLLVLWLFLNLDHQQYELIDSLKG 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 39222712 39228750 - CrPI670011_09g020140.1 Cre09g2014 508682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g2014 347 ProSiteProfiles PPC domain profile profile. 125 264 IPR005175 -
Cre09g2014 347 Gene3D - 130 260 - -
Cre09g2014 347 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 34 276 IPR039605 GO:0003680(InterPro)
Cre09g2014 347 SUPERFAMILY AF0104/ALDC/Ptd012-like 127 259 - -
Cre09g2014 347 CDD DUF296 129 243 IPR005175 -
Cre09g2014 347 MobiDBLite consensus disorder prediction 245 265 - -
Cre09g2014 347 MobiDBLite consensus disorder prediction 1 99 - -
Cre09g2014 347 Pfam Plants and Prokaryotes Conserved (PCC) domain 130 243 IPR005175 -
Cre09g2014 347 FunFam AT-hook motif nuclear-localized protein 1-like 130 261 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0923 Cre-Chr5:8458372 Cre09g2014 Cre-Chr9:39222712 1.20E-90 dispersed
Cre09g2014 Cre-Chr9:39222712 Cre09g2170 Cre-Chr9:40734516 1.00E-70 dispersed
Cre05g0345 Cre-Chr5:3171780 Cre09g2014 Cre-Chr9:39222712 1.20E-20 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g2014 - - - 0.0