Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g2028 ATGGTCTTCTGCAAAATGGCCCCTACTTCCCTCGCTTCCCGCTTCCGACAATCCGTCACCTCGACCGCACTCCGATCGTACGTCGCCGAGTTCATCTCCACCTTCTTCTACGTCTTCTCTGTCGTCGGAGCATCCATGTCCTCCCGGAAGTTTTTGCCGGGTGTTGTTGCTACGACAGACCCGTCGAGTCTTCTGATGGTCGCCATCGCCAATGCCTTCGCTTTGGCCTCGGCTGTTTACATTGCCGCCAACATCTCCGGCGGACATGTCAACCCGGCTGTGACCTTCGGAATGGCCGTCGCCGGCCATGTTAGTGTTCCCACTGCTCTCTTTTACTGGTTTGCTCAAATGCTTGCCTCTGTCATGGCCTGCATTGTTCTTAGAGCCACCCTTGTTGGACAGCGCATTACAAGCTATGCCATCACTGAAGAGATGACGGGCTTCGGAGCATCGGTGGTGGAAGGTGTATTGACATTTGCCCTAGTATACACCGTTTTCGCTGCCAGCGACTCAAGAAGAGGTCCGTGCAATGCGATCGGCGCTGTGATGATTGGGCTGATGGCTGGAGCCAATGTGCTGGCTGCCGGGCCATTTTCCGGTGGATCGGTGAACCCGGCATGCGCGTTCGGGTCAGCAATTGTGGCTGGGAGTTTCAAGAACCAGGCAGTGTACTGGGTTGGGCCATTGATTGGGGCGGCTTTGGCTGGAATTGTTCATGATAATGTGGTTTTTCCGGCTGAAAATGAAGATTCATTCAGAGGGGTTCCTGAGGCTGTTGTGGTGTAA 786 54.71 MVFCKMAPTSLASRFRQSVTSTALRSYVAEFISTFFYVFSVVGASMSSRKFLPGVVATTDPSSLLMVAIANAFALASAVYIAANISGGHVNPAVTFGMAVAGHVSVPTALFYWFAQMLASVMACIVLRATLVGQRITSYAITEEMTGFGASVVEGVLTFALVYTVFAASDSRRGPCNAIGAVMIGLMAGANVLAAGPFSGGSVNPACAFGSAIVAGSFKNQAVYWVGPLIGAALAGIVHDNVVFPAENEDSFRGVPEAVVV 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 39387254 39388464 - CrPI670011_09g020280.1 Cre09g2028 508696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g2028 261 FunFam Probable aquaporin TIP5-1 9 251 - -
Cre09g2028 261 PRINTS Major intrinsic protein family signature 185 207 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre09g2028 261 PRINTS Major intrinsic protein family signature 222 242 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre09g2028 261 PRINTS Major intrinsic protein family signature 25 44 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre09g2028 261 PRINTS Major intrinsic protein family signature 71 95 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre09g2028 261 PRINTS Major intrinsic protein family signature 108 127 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre09g2028 261 PRINTS Major intrinsic protein family signature 153 171 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre09g2028 261 Gene3D Glycerol uptake facilitator protein. 10 254 IPR023271 -
Cre09g2028 261 SUPERFAMILY Aquaporin-like 18 248 IPR023271 -
Cre09g2028 261 PANTHER AQUAPORIN-8 16 245 IPR034294 GO:0006833(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
Cre09g2028 261 Pfam Major intrinsic protein 20 239 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre09g2028 261 ProSitePatterns MIP family signature. 89 97 IPR022357 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre09g2028 Cre-Chr9:39387254 Cre09g2106 Cre-Chr9:40055183 1.50E-50 dispersed
Cre09g2028 Cre-Chr9:39387254 Cre04g1037 Cre-Chr4:28958360 1.10E-43 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g2028 K09873 - csv:101214078 448.358