Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre09g2047 | ATGGCTCAAAAGCTTCATTTTTCCATCATTCTAATTTCTTTGTTCATCCTCTCGTCAATTTCCCAATCTTTCTCAACCAAACCCAATAACAATGCCATAGATTTATGGTGCAGCCGAACGCCATATCCCGATGTTTGCAAACACTTCTTCAATGGCCAATTCGACCTGAAAAAGCTTTCAGAATTCAAAAAAACAGCCCTCAAAATCGCGATGGAGAGAGCTATAATAGCCGAAACACTCACAAAAGAGTTAGGCCAGAAATGCCGTAACCAAAAAGAGAGAGCCGCATGGGCTGACTGTTTGGAGCTTTACCAAACCACAATCCTCCACCTCAACAAAACCTTCTCCGAACAAAATTGCTCCGACTTCGACATCCAAACATGGCTCAGCTCCGCCTTGACCAACCTCGACACATGTCGTGCCGGGTTCGTCGACCTCGGCGTTAAGGATTACGGCGTCGTTTTCCCTTTTTTGGCAAATAACAACGTCACGAAGCTTATAAGTAATAGTTTGGCGATGAATAACTGCTCCGAGAGTGATGTGGGGTATAAGAATAATGAAGGGTTTCCGAAGTGGCTTCGGGTTGGAGACCGGCGGTTGTTGCAGGCGGCAGAGCCTAAGGCAGATTTGGTGGTGGCGCAAGACGGGTCGGGGAATTATAAGACGGTGCAAGCGGCGGTGGACGCGGCGGCGAAGAGGAAAGGGAGTGGGAGATTTGTGATACATATAAAGAGAGGAGTTTATAAGGAGAATGTAGTGATAAAGGTGAAGAATTTGATGCTTGTTGGAGATGGATTGAGGTATACAATTATTAGTGGGAGTAGAAGTGTTGGTGGTGGTTCTACTACTTTCAACTCTGCTACTGTTGCTGTGACTGGTGAACGTTTCATTGCCCGTGGCATCACATTCCGCAACACTGCGGGACCCGAAAACCACCAAGCAGTGGCCCTTCGGTCAGGCTCCGATCTCTCAGTGTTCTTCCGGTGCGGTTTCGAGGGATACCAAGACACTCTCTACGTGCATTCACAAAGACAATTCTACAGAGAATGCTACATTTATGGTACGGTCGATTTCATCTTCGGTAATGCCGCCGTAGTTCTCCAGAACTGCATGATCTATGCAAGAAAACCTATCCCAGGGCAACAATGCGTGGTCACGGCTCAAGGCCGAACCGACCCAAACCAAAACACGGGAATCTCAATCCACAACTCGAGAGTGATGGCAGCAGATGATCTCAAACCGGTTCTTAGCTCAGTGAGAACCTACTTGGGGAGGCCATGGAAGGAATACTCTCGCACAGTTTACTTGCAAAACTTCATGGATAGCTTGGTGAATCCAGCAGGATGGTTGGAATGGAGTGGTAATTTTGCATTGAATACATTGTATTATGGAGAGTTTAAGAATTTTGGGCCTGGTTCTTCAACTGCTAGGAGAGTGAAATGGAAGGGTTATAGAGTGATAACAAGTGCCACTGAAGCATCAAAGTTTACCGTTGGGAATTTTATTGCTGGGACTTCATGGCTGCCTGGAACTGGAGTACCATTCACTGCTGGACTTTGA | 1560 | 46.73 | MAQKLHFSIILISLFILSSISQSFSTKPNNNAIDLWCSRTPYPDVCKHFFNGQFDLKKLSEFKKTALKIAMERAIIAETLTKELGQKCRNQKERAAWADCLELYQTTILHLNKTFSEQNCSDFDIQTWLSSALTNLDTCRAGFVDLGVKDYGVVFPFLANNNVTKLISNSLAMNNCSESDVGYKNNEGFPKWLRVGDRRLLQAAEPKADLVVAQDGSGNYKTVQAAVDAAAKRKGSGRFVIHIKRGVYKENVVIKVKNLMLVGDGLRYTIISGSRSVGGGSTTFNSATVAVTGERFIARGITFRNTAGPENHQAVALRSGSDLSVFFRCGFEGYQDTLYVHSQRQFYRECYIYGTVDFIFGNAAVVLQNCMIYARKPIPGQQCVVTAQGRTDPNQNTGISIHNSRVMAADDLKPVLSSVRTYLGRPWKEYSRTVYLQNFMDSLVNPAGWLEWSGNFALNTLYYGEFKNFGPGSSTARRVKWKGYRVITSATEASKFTVGNFIAGTSWLPGTGVPFTAGL | 519 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 39579314 | 39581797 | + | CrPI670011_09g020470.1 | Cre09g2047 | 508715 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre09g2047 | 519 | Pfam | Plant invertase/pectin methylesterase inhibitor | 32 | 173 | IPR006501 | GO:0004857(InterPro) | |
| Cre09g2047 | 519 | NCBIfam | pectinesterase inhibitor domain | 6 | 175 | IPR006501 | GO:0004857(InterPro) | |
| Cre09g2047 | 519 | ProSitePatterns | Pectinesterase signature 2. | 352 | 361 | IPR033131 | - | |
| Cre09g2047 | 519 | Gene3D | - | 203 | 519 | IPR012334 | - | |
| Cre09g2047 | 519 | Pfam | Pectinesterase | 209 | 504 | IPR000070 | GO:0030599(InterPro)|GO:0042545(InterPro) | |
| Cre09g2047 | 519 | SUPERFAMILY | Pectin lyase-like | 206 | 518 | IPR011050 | - | |
| Cre09g2047 | 519 | CDD | PMEI-like_3 | 35 | 175 | - | - | |
| Cre09g2047 | 519 | PANTHER | PECTINESTERASE | 9 | 509 | - | GO:0030599(PANTHER)|GO:0046910(PANTHER) | |
| Cre09g2047 | 519 | ProSitePatterns | Pectinesterase signature 1. | 235 | 254 | IPR018040 | - | |
| Cre09g2047 | 519 | FunFam | Pectinesterase | 203 | 519 | - | - | |
| Cre09g2047 | 519 | SUPERFAMILY | Plant invertase/pectin methylesterase inhibitor | 30 | 176 | IPR035513 | - | |
| Cre09g2047 | 519 | SMART | PMEI_2 | 28 | 173 | IPR006501 | GO:0004857(InterPro) | |
| Cre09g2047 | 519 | Gene3D | Invertase/pectin methylesterase inhibitor family protein | 28 | 176 | IPR035513 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cre04g1830 | Cre-Chr4:36089652 | Cre09g2047 | Cre-Chr9:39579314 | 3.90E-120 | dispersed | |
| Cre05g0325 | Cre-Chr5:3002288 | Cre09g2047 | Cre-Chr9:39579314 | 1.10E-169 | dispersed | |
| Cre05g0907 | Cre-Chr5:8309567 | Cre09g2047 | Cre-Chr9:39579314 | 2.20E-193 | dispersed | |
| Cre09g0531 | Cre-Chr9:4970996 | Cre09g2047 | Cre-Chr9:39579314 | 3.20E-106 | dispersed | |
| Cre09g0835 | Cre-Chr9:8371939 | Cre09g2047 | Cre-Chr9:39579314 | 1.10E-100 | dispersed | |
| Cre09g1889 | Cre-Chr9:37538322 | Cre09g2047 | Cre-Chr9:39579314 | 1.90E-137 | dispersed | |
| Cre09g2047 | Cre-Chr9:39579314 | Cre10g0810 | Cre-Chr10:8413219 | 1.10E-151 | dispersed | |
| Cre05g1676 | Cre-Chr5:28047639 | Cre09g2047 | Cre-Chr9:39579314 | 2.10E-10 | transposed | |
| Cre05g0324 | Cre-Chr5:2987241 | Cre09g2047 | Cre-Chr9:39579314 | 1.70E-108 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre09g2047 | K01051 | - | csv:101216005 | 924.08 |