Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g2047 ATGGCTCAAAAGCTTCATTTTTCCATCATTCTAATTTCTTTGTTCATCCTCTCGTCAATTTCCCAATCTTTCTCAACCAAACCCAATAACAATGCCATAGATTTATGGTGCAGCCGAACGCCATATCCCGATGTTTGCAAACACTTCTTCAATGGCCAATTCGACCTGAAAAAGCTTTCAGAATTCAAAAAAACAGCCCTCAAAATCGCGATGGAGAGAGCTATAATAGCCGAAACACTCACAAAAGAGTTAGGCCAGAAATGCCGTAACCAAAAAGAGAGAGCCGCATGGGCTGACTGTTTGGAGCTTTACCAAACCACAATCCTCCACCTCAACAAAACCTTCTCCGAACAAAATTGCTCCGACTTCGACATCCAAACATGGCTCAGCTCCGCCTTGACCAACCTCGACACATGTCGTGCCGGGTTCGTCGACCTCGGCGTTAAGGATTACGGCGTCGTTTTCCCTTTTTTGGCAAATAACAACGTCACGAAGCTTATAAGTAATAGTTTGGCGATGAATAACTGCTCCGAGAGTGATGTGGGGTATAAGAATAATGAAGGGTTTCCGAAGTGGCTTCGGGTTGGAGACCGGCGGTTGTTGCAGGCGGCAGAGCCTAAGGCAGATTTGGTGGTGGCGCAAGACGGGTCGGGGAATTATAAGACGGTGCAAGCGGCGGTGGACGCGGCGGCGAAGAGGAAAGGGAGTGGGAGATTTGTGATACATATAAAGAGAGGAGTTTATAAGGAGAATGTAGTGATAAAGGTGAAGAATTTGATGCTTGTTGGAGATGGATTGAGGTATACAATTATTAGTGGGAGTAGAAGTGTTGGTGGTGGTTCTACTACTTTCAACTCTGCTACTGTTGCTGTGACTGGTGAACGTTTCATTGCCCGTGGCATCACATTCCGCAACACTGCGGGACCCGAAAACCACCAAGCAGTGGCCCTTCGGTCAGGCTCCGATCTCTCAGTGTTCTTCCGGTGCGGTTTCGAGGGATACCAAGACACTCTCTACGTGCATTCACAAAGACAATTCTACAGAGAATGCTACATTTATGGTACGGTCGATTTCATCTTCGGTAATGCCGCCGTAGTTCTCCAGAACTGCATGATCTATGCAAGAAAACCTATCCCAGGGCAACAATGCGTGGTCACGGCTCAAGGCCGAACCGACCCAAACCAAAACACGGGAATCTCAATCCACAACTCGAGAGTGATGGCAGCAGATGATCTCAAACCGGTTCTTAGCTCAGTGAGAACCTACTTGGGGAGGCCATGGAAGGAATACTCTCGCACAGTTTACTTGCAAAACTTCATGGATAGCTTGGTGAATCCAGCAGGATGGTTGGAATGGAGTGGTAATTTTGCATTGAATACATTGTATTATGGAGAGTTTAAGAATTTTGGGCCTGGTTCTTCAACTGCTAGGAGAGTGAAATGGAAGGGTTATAGAGTGATAACAAGTGCCACTGAAGCATCAAAGTTTACCGTTGGGAATTTTATTGCTGGGACTTCATGGCTGCCTGGAACTGGAGTACCATTCACTGCTGGACTTTGA 1560 46.73 MAQKLHFSIILISLFILSSISQSFSTKPNNNAIDLWCSRTPYPDVCKHFFNGQFDLKKLSEFKKTALKIAMERAIIAETLTKELGQKCRNQKERAAWADCLELYQTTILHLNKTFSEQNCSDFDIQTWLSSALTNLDTCRAGFVDLGVKDYGVVFPFLANNNVTKLISNSLAMNNCSESDVGYKNNEGFPKWLRVGDRRLLQAAEPKADLVVAQDGSGNYKTVQAAVDAAAKRKGSGRFVIHIKRGVYKENVVIKVKNLMLVGDGLRYTIISGSRSVGGGSTTFNSATVAVTGERFIARGITFRNTAGPENHQAVALRSGSDLSVFFRCGFEGYQDTLYVHSQRQFYRECYIYGTVDFIFGNAAVVLQNCMIYARKPIPGQQCVVTAQGRTDPNQNTGISIHNSRVMAADDLKPVLSSVRTYLGRPWKEYSRTVYLQNFMDSLVNPAGWLEWSGNFALNTLYYGEFKNFGPGSSTARRVKWKGYRVITSATEASKFTVGNFIAGTSWLPGTGVPFTAGL 519
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 39579314 39581797 + CrPI670011_09g020470.1 Cre09g2047 508715
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cre09g2047 519 Pfam Plant invertase/pectin methylesterase inhibitor 32 173 IPR006501 GO:0004857(InterPro)
Cre09g2047 519 NCBIfam pectinesterase inhibitor domain 6 175 IPR006501 GO:0004857(InterPro)
Cre09g2047 519 ProSitePatterns Pectinesterase signature 2. 352 361 IPR033131 -
Cre09g2047 519 Gene3D - 203 519 IPR012334 -
Cre09g2047 519 Pfam Pectinesterase 209 504 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cre09g2047 519 SUPERFAMILY Pectin lyase-like 206 518 IPR011050 -
Cre09g2047 519 CDD PMEI-like_3 35 175 - -
Cre09g2047 519 PANTHER PECTINESTERASE 9 509 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cre09g2047 519 ProSitePatterns Pectinesterase signature 1. 235 254 IPR018040 -
Cre09g2047 519 FunFam Pectinesterase 203 519 - -
Cre09g2047 519 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 30 176 IPR035513 -
Cre09g2047 519 SMART PMEI_2 28 173 IPR006501 GO:0004857(InterPro)
Cre09g2047 519 Gene3D Invertase/pectin methylesterase inhibitor family protein 28 176 IPR035513 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre04g1830 Cre-Chr4:36089652 Cre09g2047 Cre-Chr9:39579314 3.90E-120 dispersed
Cre05g0325 Cre-Chr5:3002288 Cre09g2047 Cre-Chr9:39579314 1.10E-169 dispersed
Cre05g0907 Cre-Chr5:8309567 Cre09g2047 Cre-Chr9:39579314 2.20E-193 dispersed
Cre09g0531 Cre-Chr9:4970996 Cre09g2047 Cre-Chr9:39579314 3.20E-106 dispersed
Cre09g0835 Cre-Chr9:8371939 Cre09g2047 Cre-Chr9:39579314 1.10E-100 dispersed
Cre09g1889 Cre-Chr9:37538322 Cre09g2047 Cre-Chr9:39579314 1.90E-137 dispersed
Cre09g2047 Cre-Chr9:39579314 Cre10g0810 Cre-Chr10:8413219 1.10E-151 dispersed
Cre05g1676 Cre-Chr5:28047639 Cre09g2047 Cre-Chr9:39579314 2.10E-10 transposed
Cre05g0324 Cre-Chr5:2987241 Cre09g2047 Cre-Chr9:39579314 1.70E-108 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g2047 K01051 - csv:101216005 924.08