Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g2062 ATGGTGATTTATGGTTCCTCTGCTGCACTACAGTGTTCTTTTGAGGCACAGCGAACTTGGGCATCTCTAGGGGGAAATTCTGCCTGTGAAGGGAGCTTTGATGCTAAGAGTTGCATAATTATGGAGGGGATGGAAGATGAATCCAATAGAAATCTTATGTTGCTGCCTTCCCCTTCTCCAGTTGTAGCCGTTGCTATCAGTGGGAAGAAAAACAGTAAATATATAATTAGGTGGTCATTGGATAAGTTTCTACCTGAGGGCATCACTGATTTCAAGTTGCTACACGTCATCCCAAGGATCACTAGTGTTCCAACGCCAATGGGAAACTCAATTCCAATTTCACAAGTTCGTGATGATGTCGCTGCGGCTTACAGGAAAGAAATTGGGTGGCAGACAAGTGAAAAACTTCTTCCATATAAGAAGATGTTTGCTGAGAGAAAGGTTCATCTTGATATTGCAACTCTTGAAGCAGATGATGTGGCAAATACAGTAATAGAAGAGGTTAAAAAATGTTCAATCAACAAGCTTGTTATAGGAGTTTCTTCACAGGGATTATTCTCAAGGAAACTAAATGGTCTATCCTCAAGAATATCAGCCCTTGCACCTAAATATTGTACAGTCTATGCTATTTCAAAAGGAAAACTAGCCTCAATACGGCCGCCTAATACGGGGACAAATGTGAGCATTAAAGATGATGCGAGTGAAGCAAGTTCTGCGAATAGCTACTCAAGCCATACATCTGGCTCCCTTACAGATAGCAGTTCAAGCTTGGTTACCTCCTATTCTCATTTCCCCTCACCTTCCTCTTCTTTACCATTACAACGATTTCAAGCTCTTTCAACCATTAATCAATCTCTTCTTACGAAAAAACCGAGCCTCATTAAAGTCAACCATTCTAGATGTCAATCCGTTGATATTGAGAATCAGGTGGATGGAGTTCATTCTTCTTCCTATGCTTCCGATTGTGCACAAACATTGAGTCGAACCTCTAGTTGTAAAAGCTTGCCAGAAGATTACCAGTCCTGGGTTACTGATGAAGCTTCATCCACAGGCGCGTTCAATGATTATCCTTCATGTGAAAGTCAGGCGGATGTGAGCTTTGAGCTTGAAAAGTTGAGAATCGAACTAAGACATGCAAGAGGAATGTATGCAATTGCTCAACATGAGACAATTGATGCCTCTCGAAAGCTGAACCATCTAAGTAAGCAACGAACAGAGGAAGCTAGGAAGCTTGAAGAGATCAACAATAAAGAGGTAGCCACCAAAAAACTTGCAAGGGAAGAGAGAGAGAAACGTGAAGCTTTGAGAAGAGAAGCTAAGTATTTAAAAGAAAGCGCTGAAAGAGAGGGCATCTATAGGAAGGAAGCAGAGACAAAAGCTCTTCAGGATGCCAAAGAGAAGGGAAAGCATGAAAATGCTCTTCAAGGACCTCTGCAGCAATACCAATATTTTCAGTGGGAAGATATTGTTTCTGCCACATCATCTTTCTCTGAGGATCTTAAGATTGGAATGGGAGCACATGGAACAGTTTATAAGTGCAGCTTGCATCATACAACTGTAGCAGTGAAGGTTCTTCACTCTAGAGATGATCACAAAAAGATGCAATTTCTTCAGGAGCTTGAAATCTTGAGCAAAATCCATCACCCCCATCTACTATTACTCCTCGGTGCGTGTCCGGATAAGAATTGTCTGGTTTATGAGTACATGGAAAATGGTAGCTTGGAGGATAGGTTATACCACAGAGGCAATACACCTGCAATCCCATGGTATGAGAGGTTTCGAATTGCTTGGGAAATAGCTTCTGCTCTTGTCTTTCTTCACAGCTCAAAACCAAAACCCATAATCCACCGTGACCTTAAACCAGCAAACATCTTACTTGACCAAAACCTGGTGAGTAAAATCGGCGACGTCGGTCTTTCTACAGTGTTTAATTCAGACCCTTTAATGTCTACTGCATTCATGAATAGTGGACCAGTTGGGACTCTCTGCTACATAGATCCCGAGTATCAACGAACTGGGTTACTCTCGCCTAAGTCTGATGTATATGCCTTTGGAATGGTGATCTTGCAGTTACTAACTGCAAAACCAGCAGTAGCACTAACCCATGTGGTGGAAACAGCCATTGATAACTGCACTTTAATTAATGTTCTGGATATAGAGGCTGGGGATTGGCCCGTCGAAGAGACGTATGAATTGGCAAGATTAGGACTTCGCTGCACCGAGATGCAACGTAAAGATAGGCCTGACTTAAAGAATCAAGTGCTTCCCTTGTTGCTGACACTGAAAGAAGTTGCTGATGAGGCTCGCAATTTGGCCTCCAAAGTTCCACCTGCAATTCCTAATCATTTCATCTGTCCAATTCTTCAGGATGTGATGAATGACCCTTGTGTGGCGGCGGATGGATACACATACGATCGTCAGGCAATAGAGAAGTGGATTCAGGAGAACGATAATTCACCCATAACGATGTTGCCGTTGCCACATAAGAATTTAATACCAAATTACAATCTACTCTCAGCAATTCGCTGCCGTCGTCCTCAGCTGTCGCCTCCCTCGCCACTACTGATCACCGCCGCCGTCACAAATCGGTTGAGGGGAGGATAA 2604 42.86 MVIYGSSAALQCSFEAQRTWASLGGNSACEGSFDAKSCIIMEGMEDESNRNLMLLPSPSPVVAVAISGKKNSKYIIRWSLDKFLPEGITDFKLLHVIPRITSVPTPMGNSIPISQVRDDVAAAYRKEIGWQTSEKLLPYKKMFAERKVHLDIATLEADDVANTVIEEVKKCSINKLVIGVSSQGLFSRKLNGLSSRISALAPKYCTVYAISKGKLASIRPPNTGTNVSIKDDASEASSANSYSSHTSGSLTDSSSSLVTSYSHFPSPSSSLPLQRFQALSTINQSLLTKKPSLIKVNHSRCQSVDIENQVDGVHSSSYASDCAQTLSRTSSCKSLPEDYQSWVTDEASSTGAFNDYPSCESQADVSFELEKLRIELRHARGMYAIAQHETIDASRKLNHLSKQRTEEARKLEEINNKEVATKKLAREEREKREALRREAKYLKESAEREGIYRKEAETKALQDAKEKGKHENALQGPLQQYQYFQWEDIVSATSSFSEDLKIGMGAHGTVYKCSLHHTTVAVKVLHSRDDHKKMQFLQELEILSKIHHPHLLLLLGACPDKNCLVYEYMENGSLEDRLYHRGNTPAIPWYERFRIAWEIASALVFLHSSKPKPIIHRDLKPANILLDQNLVSKIGDVGLSTVFNSDPLMSTAFMNSGPVGTLCYIDPEYQRTGLLSPKSDVYAFGMVILQLLTAKPAVALTHVVETAIDNCTLINVLDIEAGDWPVEETYELARLGLRCTEMQRKDRPDLKNQVLPLLLTLKEVADEARNLASKVPPAIPNHFICPILQDVMNDPCVAADGYTYDRQAIEKWIQENDNSPITMLPLPHKNLIPNYNLLSAIRCRRPQLSPPSPLLITAAVTNRLRGG 867
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 39670722 39684394 - CrPI670011_09g020620.1 Cre09g2062 508730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g2062 867 ProSiteProfiles Protein kinase domain profile. 496 758 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre09g2062 867 Pfam U-box domain 779 842 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cre09g2062 867 SUPERFAMILY RING/U-box 773 842 - -
Cre09g2062 867 ProSitePatterns Serine/Threonine protein kinases active-site signature. 614 626 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cre09g2062 867 Gene3D Phosphorylase Kinase; domain 1 465 568 - -
Cre09g2062 867 SMART Ubox_2 782 844 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cre09g2062 867 ProSiteProfiles U-box domain profile. 778 851 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cre09g2062 867 ProSitePatterns Protein kinases ATP-binding region signature. 502 523 IPR017441 GO:0005524(InterPro)
Cre09g2062 867 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 62 192 - -
Cre09g2062 867 Gene3D Transferase(Phosphotransferase) domain 1 569 774 - -
Cre09g2062 867 Coils Coil 397 445 - -
Cre09g2062 867 SUPERFAMILY Protein kinase-like (PK-like) 477 751 IPR011009 -
Cre09g2062 867 Pfam Protein kinase domain 499 750 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cre09g2062 867 Coils Coil 369 389 - -
Cre09g2062 867 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 778 847 IPR013083 -
Cre09g2062 867 CDD STK_N 61 213 - -
Cre09g2062 867 Gene3D HUPs 51 210 IPR014729 -
Cre09g2062 867 PANTHER OS02G0152300 PROTEIN 62 841 IPR051348 -
Cre09g2062 867 CDD RING-Ubox_WDSUB1-like 780 834 - -
Cre09g2062 867 SMART serkin_6 496 758 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g0232 Cre-Chr5:2214244 Cre09g2062 Cre-Chr9:39670722 2.20E-99 dispersed
Cre06g1134 Cre-Chr6:5215794 Cre09g2062 Cre-Chr9:39670722 2.40E-70 dispersed
Cre09g2062 Cre-Chr9:39670722 Cre11g1565 Cre-Chr11:25312035 7.70E-99 dispersed
Cre09g2062 Cre-Chr9:39670722 Cre11g0662 Cre-Chr11:3696276 8.50E-130 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64428 PF00069 Pkinase 3.10E-40 CL0016 Cre PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g2062 - - - 0.0