Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g2079 ATGTACCAGAGCACTAAAACAGAGTCCGATTTTGGTTTTCTAGACCCAATTCGCCGCCATTTATTGGGCGAATCGGAGATTTCCGCCGCCAACGCCGCCGCTCCCGGCGGCCGACCCACTCCCGTTTTCAGTCGGAGTGGTAGTTTCAGTAGCTTAATTCCATGTCTTGAAGACAATTGGGGCGATTTGCCTCTCAAGGTTGACGACTCGGAAGATATGATGCTTGCCGCCGTTCTCCGAGATGCCGTCGGTGCCGGATGGGTTCCGTCGCTTGGAAGCTGCGATTTTGGGTATTCGACGGTGAAATCAGAGCCGGAGGTGCTTCCGGTGAGTTACCCGGTGGTGCTACCGAATGTGACGGTAAAGACGACGGTGATACCGGCGAAAGGGAAGCATTATAGAGGAGTGCGGCAACGGCCGTGGGGGAAATTCGCAGCCGAGATTCGAGACCCGGCGAAAAATGGTGCTAGAGTTTGGCTTGGAACTTATGAGACGGCAGAGGATGCGGCGTTAGCTTATGATCGAGCGGCTTATCGAATGCGAGGCTCAAGGGCTCTGCTAAATTTTCCCCTCCGTGTCAACTCCGGCGAGCCCGAACCGGTTAGGGTCACGTCGAAGCGATCGTCACCGGAGGTTTCATCGTCGCCGAAGCGGCGGAAGAAAGTCGGCTCCGCCGTAGAAGGTGGAGGAGTACAAGTGGAGCAACAAGTGGCAAGCTTTACACATGGAGGGCAGCTGTTTGTAAGCCAATGCCAACATTTAGCCAATAATTATAAAAAGCTCTTTTAA 789 53.99 MYQSTKTESDFGFLDPIRRHLLGESEISAANAAAPGGRPTPVFSRSGSFSSLIPCLEDNWGDLPLKVDDSEDMMLAAVLRDAVGAGWVPSLGSCDFGYSTVKSEPEVLPVSYPVVLPNVTVKTTVIPAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEDAALAYDRAAYRMRGSRALLNFPLRVNSGEPEPVRVTSKRSSPEVSSSPKRRKKVGSAVEGGGVQVEQQVASFTHGGQLFVSQCQHLANNYKKLF 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 39857391 39858179 - CrPI670011_09g020790.1 Cre09g2079 508747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g2079 262 Gene3D AP2/ERF domain 131 193 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre09g2079 262 PRINTS Ethylene responsive element binding protein signature 133 144 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre09g2079 262 PRINTS Ethylene responsive element binding protein signature 156 172 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre09g2079 262 SMART rav1_2 132 196 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre09g2079 262 ProSiteProfiles AP2/ERF domain profile. 132 190 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre09g2079 262 CDD AP2 131 190 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre09g2079 262 SUPERFAMILY DNA-binding domain 132 192 IPR016177 GO:0003677(InterPro)
Cre09g2079 262 Pfam AP2 domain 132 183 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre09g2079 262 PANTHER DNA-BINDING DOMAIN 111 219 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Cre09g2079 262 MobiDBLite consensus disorder prediction 197 227 - -
Cre09g2079 262 FunFam Ethylene-responsive transcription factor 2 131 191 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre09g2079 Cre-Chr9:39857391 Cre10g0489 Cre-Chr10:4010989 4.50E-26 dispersed
Cre10g0488 Cre-Chr10:3977494 Cre09g2079 Cre-Chr9:39857391 4.60E-80 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54420 PF00847 AP2 9.90E-15 CL0081 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g2079 K09286 - csv:101221583 424.091