Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g2106 ATGGTGAAGTTGGCCGTGGGCTCCGCCGCCGATTCATTCAGTGCGGCCTCTCTTAAAGCTTATCTCTCTGAATTCATCGCCACTCTCCTTTTCGTCTTCGCCGGCGTCGGCTCCGCCATCGCCTACGGTAAGTTGACGTCCGATGCGGCGTTGGATGCACCAGGTTTGGTGGCAGTGGCAGTGGCTCACGCATTTGCATTGTTTGTCGGTGTGTCGATGGCAGCGAACATCTCCGGCGGCCACCTAAACCCGGCGGTGACCTTTGGGTTGGCCATCGGCGGCAACATCACCATCTTGACCGGCTTGTTCTACTGGATCGCCCAATTGCTTGGCTCCATTGTTGCCTGCCTCCTCCTTCAATTCGTTACCAACGGCAAGAGTATTCCGACCCACGGCGTGGCGGCGGGACTGGGAGCAATTGAAGGCGTAGTATTCGAGATAGTAATCACCTTCGGTCTGGTGTACACAGTTTACGCTACAGCCGCAGACCCCAAAAAGGGTTCTCTTGGAACAATTGCCCCAATTGCTATCGGCTTCATTGTGGGTGCCAACATTCTCGCCGCCGGCCCATTTAGCGGTGGGTCCATGAACCCGGCCCGTTCTTTCGGCCCAGCTGTTGTCAGCGGAGACTTCTCTCAGATTTGGATCTATTGGGTCGGCCCACTTATTGGTGGTGGGCTTGCTGGCCTTATCTATGGCGACGTCTTTATTTCCTCTTATGCCCCTGTTCCTGTCTCTGGTGATTATGCTTAA 753 55.38 MVKLAVGSAADSFSAASLKAYLSEFIATLLFVFAGVGSAIAYGKLTSDAALDAPGLVAVAVAHAFALFVGVSMAANISGGHLNPAVTFGLAIGGNITILTGLFYWIAQLLGSIVACLLLQFVTNGKSIPTHGVAAGLGAIEGVVFEIVITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFSQIWIYWVGPLIGGGLAGLIYGDVFISSYAPVPVSGDYA 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 40055183 40057866 - CrPI670011_09g021060.1 Cre09g2106 508774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g2106 250 ProSitePatterns MIP family signature. 81 89 IPR022357 -
Cre09g2106 250 PANTHER AQUAPORIN-8 3 239 IPR034294 GO:0006833(PANTHER)|GO:0009705(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
Cre09g2106 250 CDD MIP 19 232 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre09g2106 250 Gene3D Glycerol uptake facilitator protein. 2 243 IPR023271 -
Cre09g2106 250 NCBIfam MIP family channel protein 23 232 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre09g2106 250 Pfam Major intrinsic protein 14 232 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre09g2106 250 FunFam Probable aquaporin TIP1-1 2 248 - -
Cre09g2106 250 SUPERFAMILY Aquaporin-like 16 239 IPR023271 -
Cre09g2106 250 PRINTS Major intrinsic protein family signature 178 200 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre09g2106 250 PRINTS Major intrinsic protein family signature 100 119 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre09g2106 250 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre09g2106 250 PRINTS Major intrinsic protein family signature 145 163 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre09g2106 250 PRINTS Major intrinsic protein family signature 215 235 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cre09g2106 250 PRINTS Major intrinsic protein family signature 63 87 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre09g0171 Cre-Chr9:1957490 Cre09g2106 Cre-Chr9:40055183 3.20E-98 dispersed
Cre09g2028 Cre-Chr9:39387254 Cre09g2106 Cre-Chr9:40055183 1.50E-50 dispersed
Cre09g2106 Cre-Chr9:40055183 Cre10g2107 Cre-Chr10:35677890 3.20E-74 dispersed
Cre09g2106 Cre-Chr9:40055183 Cre04g1037 Cre-Chr4:28958360 1.20E-79 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g2106 K09873 - csv:101203925 465.307