Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g2142 ATGTCATCTTCTTCATCTTCTTCTTCTCCTACTTCTACTACTACTGCTACCACTACGACTACGTTATCTCAACAACAACACCTGCAACAGCAGCTGGACCACCACCTTCCTTCTCCTGAGCAACTCTGTTATGTCCATTGCAATATTTGCGACACTGTCCTTGCGGTTAGTGTTCCTTGTTGTAGTTTGTTTAAAACTGTGACAGTTCGATGTGGACACTGCACGAATCTGCTTCCTGTCAACATGCGTGGCCTTCTTCTGCCTTCACCTAATCAATTTCATCAGCTTGGCCACTCTTTCTTTTCTCCTAATTCTCATAACATTCTCGAAAATATGGCTACACCAAATTCCAATTATCTTATCAACCAGTTTGGAGCTACTACTAACAATTTTGGAATGCCATCTCGAGGAGTTACTGATGAACTCCCTAGGCCACCAGCCATTAACAGACCTCCGGAGAAGAGGCAGAGAGTGCCTTCTGCATACAACCGCTTCATCAAGGACGAGATCCAACGCATCAAGTCTGTGAATCCCGATATATCCCACAGAGAAGCCTTCAGTGCCGCTGCTAAGAATTGGGCCCACTTTCCACACATTCACTTTGGTCTTATGCCCGACCAGACAACGAAGAAGACAAATATCCGCCAGCAGGAAGGAGATACTCAGAATGTTCTGATGAAAGACAATGGATTCTATGCCTCAGCCAATGTTGGTGTCTCCCACTTCTAA 729 45.13 MSSSSSSSSPTSTTTATTTTTLSQQQHLQQQLDHHLPSPEQLCYVHCNICDTVLAVSVPCCSLFKTVTVRCGHCTNLLPVNMRGLLLPSPNQFHQLGHSFFSPNSHNILENMATPNSNYLINQFGATTNNFGMPSRGVTDELPRPPAINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDISHREAFSAAAKNWAHFPHIHFGLMPDQTTKKTNIRQQEGDTQNVLMKDNGFYASANVGVSHF 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 40436043 40438599 + CrPI670011_09g021420.1 Cre09g2142 508810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g2142 242 Gene3D High mobility group box domain 146 215 IPR036910 -
Cre09g2142 242 MobiDBLite consensus disorder prediction 1 31 - -
Cre09g2142 242 FunFam Axial regulator YABBY 148 219 - -
Cre09g2142 242 SUPERFAMILY HMG-box 148 196 IPR036910 -
Cre09g2142 242 CDD HMG-box_SF 157 193 - -
Cre09g2142 242 Pfam YABBY protein 39 203 IPR006780 GO:0007275(InterPro)
Cre09g2142 242 PANTHER PROTEIN YABBY 6-RELATED 39 212 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0009944(PANTHER)|GO:0010154(PANTHER)|GO:0010158(PANTHER)|GO:0045165(PANTHER)|GO:1902183(PANTHER)|GO:2000024(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre05g2709 Cre-Chr5:37994545 Cre09g2142 Cre-Chr9:40436043 3.60E-33 dispersed
Cre06g1989 Cre-Chr6:27349901 Cre09g2142 Cre-Chr9:40436043 1.20E-41 dispersed
Cre09g2142 Cre-Chr9:40436043 Cre11g0793 Cre-Chr11:5151634 2.70E-41 dispersed
Cre10g0542 Cre-Chr10:4934869 Cre09g2142 Cre-Chr9:40436043 4.70E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54425 PF04690 YABBY 2.90E-70 CL0114 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g2142 K25796 - csv:101214748 429.869