Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g2160 ATGGGAATCAAAGGCGTCTCCTCGGCGCCCGGCGATTTCATCTACTTCAAGTCTCAGGTTCCCCTTCACCGGATTCCTATTGGCACCAAGCAATGGCGATACTATGATTTTGGCCCCAAAGTTGTACCGCCTCTTATCTGTCTTCCTGGAATAGCGGGGACGGCAGATGTATACTACAAACAGATTATGTTTTTGTCAATGAAGAATTACTCTCTGCCTGAGTTAGAAATGTTGCTCAAGGATCAATGCAATTGCTCCCGCTTTTCCGGCTACCGGGTAATTTCTGTTGACATTCCACGTGTATGGAATCATCAAGAGTGGATTCAAACATTTGAAAAGTTCTTGGATGCTATAGACGTTCATCGTATACATCTTTATGGCACTTCACTTGGGGGCTTTCTAGCACAACTTTTTGCTCAACATCGGCCAAGACGTGTTAAATCTTTGATATTGTCTAATTCATTTCTTGAGACTAAAAGTTTTTCTGCAGCAATGCCATGGTCTCCAATGTATGCTTCTGATACTTCCAATTTTCTTTCCCCTTCACTCAACACCTCAATGGCTCGAGGAATTCGTGATGGCCCACATGAACCTTTCATTGCAGATTCGGTAGACTTTGTTGTTTCTCAGGTGGAAACGCTTTCAAAAGAAGATTTGGCATCGAGGCTGACATTAACAGTTGATGATGCCTCAATTGGGCCTCTTCTTCTTCCAGATTCATCGATTACCATAATGGATACAAACGACTATTGTGCGGTTCCACTGCCACTCAAAGATCAACTGAATGAAAGATATTCTGGAGCCAGGCGAGCATACTTGAAAACAGGGGGTGATTTCCCATTTCTTTCACGCCCTGATGAAGTTAACTTGCATCTTCAGCTGCACTTGAGACGTGTTGGCGTAGAAGCACGCCCAGATTTGGTCCAGGTTGCTCCACAAGGAGGTAATGACAGTGGTCCTAGTGAAAAGAAGGACGAAAGAGATGGTGATGATGACACACACAAGGATGACAACGAACACAGGGAAACTTCACCTTCCGAAAGTCAAATATCTCCAGCTCAAGAAAGTTCAGAATCTCATAGTATAGAGAATATAGAGAATCAGCTACTTAACAATGCTAAAGCTTGTTATTTGGGTAATGAGATGCTTTTATCAACTCACGGAGAAACTGAAGTACTGACGGTAGTCGGTGAGATATTACAACGATATTTTCAGATGATATATTTAAGTTTGATGCTAAGCATGAAGGATGCTGCTTCAACTCACCTGTTGTCATTCATACCAGACAGAAGCCGAACACAGATCGAATCATGTAGCCACCAAACACTCTTAACTCAAAATTATGCAACCAGGGTGCTAGCAGTTGTTGACTCGCTGCAAGGGAAAAAGAAACTTCATAAAGCAGCTGCTTATCAATCATGA 1422 42.69 MGIKGVSSAPGDFIYFKSQVPLHRIPIGTKQWRYYDFGPKVVPPLICLPGIAGTADVYYKQIMFLSMKNYSLPELEMLLKDQCNCSRFSGYRVISVDIPRVWNHQEWIQTFEKFLDAIDVHRIHLYGTSLGGFLAQLFAQHRPRRVKSLILSNSFLETKSFSAAMPWSPMYASDTSNFLSPSLNTSMARGIRDGPHEPFIADSVDFVVSQVETLSKEDLASRLTLTVDDASIGPLLLPDSSITIMDTNDYCAVPLPLKDQLNERYSGARRAYLKTGGDFPFLSRPDEVNLHLQLHLRRVGVEARPDLVQVAPQGGNDSGPSEKKDERDGDDDTHKDDNEHRETSPSESQISPAQESSESHSIENIENQLLNNAKACYLGNEMLLSTHGETEVLTVVGEILQRYFQMIYLSLMLSMKDAASTHLLSFIPDRSRTQIESCSHQTLLTQNYATRVLAVVDSLQGKKKLHKAAAYQS 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 40608140 40614474 + CrPI670011_09g021600.1 Cre09g2160 508828

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g2160 473 MobiDBLite consensus disorder prediction 309 361 - -
Cre09g2160 473 MobiDBLite consensus disorder prediction 319 344 - -
Cre09g2160 473 Pfam alpha/beta hydrolase fold 43 160 IPR000073 -
Cre09g2160 473 MobiDBLite consensus disorder prediction 345 361 - -
Cre09g2160 473 Gene3D alpha/beta hydrolase 17 299 IPR029058 -
Cre09g2160 473 PANTHER ACID CLUSTER PROTEIN 33 6 71 IPR026151 -
Cre09g2160 473 SUPERFAMILY alpha/beta-Hydrolases 20 292 IPR029058 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g2160 K19367 - - csv:101212583 671.003
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g487 . . . . . . . . . . . Cma15g01162 . Car15g01050 . . . . . . . . . . . . . . . . . . . . . . Csa05g00378 Chy09g01134 . . . . . Bpe08g01448 . . . . . Cmo15g01223 . . . . . Cpe13g00211 Bhi12g00377 . . Lac11g2222 Hepe06g1638 . Lcy12g1761 Cla01g00351 Cam01g0367 Cec01g0363 Cco01g0377 Clacu01g0370 Cmu01g0350 Cre09g2160 Lsi09g00378 . . Cme09g01665
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007275 0 1 0 0 1 1 2 1 1 1 1 1 2 1 1 4 1 2 2 1 1 1 1 1 3 1 1 1 1 1 36