Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g2170 ATGGAGGGAAGGGATGGTGGTGGCGCAAGTAGTGGGGTTACTGTGGTAGGATCAGATGCTCCGTCGGAGTACAAAATAGCTCCGAGGACCTCCGATAACCCACCGCAGACTGGTGGATCAACGCCGCCGCCGGCGACTCAATCAACTTCGACGCCGTCGGCTTCAGCTCAAGTAACTGCGCAGCCTCCGCCGCCTACGGCGGCCTCCTCAGTACCGGGAAAGAAGAAAAGAGGGAGACCCAGAAAATATGGGCCCGATGGCTCTGTTTCTATGGCTCTGTCTCCCAAGCCGATATCGTCATCAGTGCCGCCGCCGGTGATCGACTTCTCGACGGAGAAGAAGGGGAAAGTACGGCCGGCGAGCGCTGTGAGTAAAAGCAAGTTCGAAGTGGATAATTTAGGCGACTGGGTTCCATGTTCTGTTGGTGGAAATTTTACACCTCATATCATCACTGTCAATGCAGGGGAGGATGTCACCATGAAGATTATATCCTTTTCTCAACAAGGGCCTCGAGCTATATGCATTTTATCTGCGAACGGTGTGATCTCAAGTGTCACTCTTCGTCAGCCTGATTCATCTGGAGGAACACTAACTTATGAGGGACGCTTTGAAATACTTTCCTTGTCTGGCTCATTCATGCCTAGTGACAACGGAGGAACTAGAAGTAGATCTGGTGGAATGAGTGTTTCCTTAGCAAGTCCAGATGGGCGTGTCGTAGGCGGTGGAGTAGCTGGTCTATTAGTAGCTGCAAGTCCTGTTCAGGTTGTAGTAGGGAGTTTTCTATCTGGAAATCAACACGAGCAGAAACCGAAAAAACCAAAACATGATACTATTTCACCGGCCCCGCCAACTGCTGCCATTCCAATATCTTGCGTTGATCCTAAGTCCAACCTCTCACCTTCCAGTTCCTTTCGTGGCGATAACTGGTCAATGCTGCCAACTGATTCAAGGAATAAGTCAACTGATATCAATGTATCCCTACCCAGTGCGTGA 993 50.45 MEGRDGGGASSGVTVVGSDAPSEYKIAPRTSDNPPQTGGSTPPPATQSTSTPSASAQVTAQPPPPTAASSVPGKKKRGRPRKYGPDGSVSMALSPKPISSSVPPPVIDFSTEKKGKVRPASAVSKSKFEVDNLGDWVPCSVGGNFTPHIITVNAGEDVTMKIISFSQQGPRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPSDNGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLSGNQHEQKPKKPKHDTISPAPPTAAIPISCVDPKSNLSPSSSFRGDNWSMLPTDSRNKSTDINVSLPSA 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 40734516 40738003 - CrPI670011_09g021700.1 Cre09g2170 508838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g2170 330 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 45 309 IPR039605 GO:0003680(InterPro)
Cre09g2170 330 MobiDBLite consensus disorder prediction 29 64 - -
Cre09g2170 330 MobiDBLite consensus disorder prediction 1 113 - -
Cre09g2170 330 SUPERFAMILY AF0104/ALDC/Ptd012-like 144 265 - -
Cre09g2170 330 MobiDBLite consensus disorder prediction 264 330 - -
Cre09g2170 330 Gene3D - 147 276 - -
Cre09g2170 330 MobiDBLite consensus disorder prediction 294 330 - -
Cre09g2170 330 FunFam AT-hook motif nuclear-localized protein 1-like 147 278 - -
Cre09g2170 330 Pfam Plants and Prokaryotes Conserved (PCC) domain 147 260 IPR005175 -
Cre09g2170 330 CDD DUF296 146 237 IPR005175 -
Cre09g2170 330 ProSiteProfiles PPC domain profile profile. 142 281 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre09g2014 Cre-Chr9:39222712 Cre09g2170 Cre-Chr9:40734516 1.00E-70 dispersed
Cre09g2170 Cre-Chr9:40734516 Cre11g2294 Cre-Chr11:34578089 3.50E-52 dispersed
Cre09g2170 Cre-Chr9:40734516 Cre09g2174 Cre-Chr9:40811400 1.50E-18 proximal
Cre11g0545 Cre-Chr11:2433570 Cre09g2170 Cre-Chr9:40734516 1.10E-103 transposed
Cre05g0923 Cre-Chr5:8458372 Cre09g2170 Cre-Chr9:40734516 1.40E-70 wgd
Cre05g0305 Cre-Chr5:2836686 Cre09g2170 Cre-Chr9:40734516 2.40E-88 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g2170 - - - 0.0