Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g2174 ATGGATTCCCACTCCCTTCCCCCTCCTTTCCACACCCGTGATTTCCATCTCCAACCACACCAATTCCACAACAACAATAACAACAATTCCGAAGAAGAACATAGCACCACCACCACCCGCCTCAAGCGCGACCGCGATGACGACGACCACCACACCAACAACTCCAACCCCAACAGCGCTGGCGATGGTGTCCCCGGCTCCACCGACGGAGAAATCACTCGGCGTCCTAGAGGTAGACCTGCTGGATCCAAAAACAAACCCAAACCCCCCATTATTATTACTCGCGACAGCGCCAACGCCCTTCGTACCCACGTCATCGAAGTCACCGACGGCTGCGATATCGTCGACAGCGTCGCTACCTTCGCTCGTCGACGACAACGTGGCGTTTGTATTATGAGTGGTACTGGTACTGTCACCAACGTCACTCTCCGTCAACCCGCTTCCCCCGGTGCAATTGTCAACTTACATGGCCGGTTCGAGATCTTATCTCTCGCCGGCTCTTTTCTTCCTCCTCCCGCTCCTCCAGCTGCTACTACTTTAACTATTTATCTCGCTGGCGGTCAAGGTCAAGTCGTCGGCGGTAGCGTCGTTGGTACTTTAATCGCTTCTGGTCCTGTCGTAATCATGGCTGCCTCCTTTAGTAACGCTGCTTATGAACGGCTTCCGTTGGAGGATGACGATCAGCCACCGCTTCCGTCGCTACAAGGCGGCGGCGGAATTGGGTCACCGGATGAAGTTGGACAGTCTCAAACAGCGCAAACGGCGCATCATCAGCAGAATCAACAACAACAGCAACTTCTTAGCGACGGAAATGCGCCGTTATTTCACGGTTTGCCTCCGAATCTCTTGAATTCAATTCAAATGCCACCGTCTGAAGCAGCGTATTGGGCAACTGCCCGACCTCCGTACTAA 912 53.95 MDSHSLPPPFHTRDFHLQPHQFHNNNNNNSEEEHSTTTTRLKRDRDDDDHHTNNSNPNSAGDGVPGSTDGEITRRPRGRPAGSKNKPKPPIIITRDSANALRTHVIEVTDGCDIVDSVATFARRRQRGVCIMSGTGTVTNVTLRQPASPGAIVNLHGRFEILSLAGSFLPPPAPPAATTLTIYLAGGQGQVVGGSVVGTLIASGPVVIMAASFSNAAYERLPLEDDDQPPLPSLQGGGGIGSPDEVGQSQTAQTAHHQQNQQQQQLLSDGNAPLFHGLPPNLLNSIQMPPSEAAYWATARPPY 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 40811400 40812311 + CrPI670011_09g021740.1 Cre09g2174 508842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g2174 303 CDD DUF296 102 168 IPR005175 -
Cre09g2174 303 MobiDBLite consensus disorder prediction 244 270 - -
Cre09g2174 303 MobiDBLite consensus disorder prediction 223 283 - -
Cre09g2174 303 MobiDBLite consensus disorder prediction 1 93 - -
Cre09g2174 303 ProSiteProfiles PPC domain profile profile. 98 237 IPR005175 -
Cre09g2174 303 SUPERFAMILY AF0104/ALDC/Ptd012-like 98 229 - -
Cre09g2174 303 FunFam AT-hook motif nuclear-localized protein 101 228 - -
Cre09g2174 303 MobiDBLite consensus disorder prediction 19 34 - -
Cre09g2174 303 Pfam Plants and Prokaryotes Conserved (PCC) domain 102 214 IPR005175 -
Cre09g2174 303 MobiDBLite consensus disorder prediction 35 53 - -
Cre09g2174 303 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 30 303 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0010228(PANTHER)
Cre09g2174 303 PIRSF ESCAROLA 12 303 IPR014476 GO:0003680(InterPro)
Cre09g2174 303 Gene3D - 101 229 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre02g0655 Cre-Chr2:3479554 Cre09g2174 Cre-Chr9:40811400 3.50E-58 dispersed
Cre05g0299 Cre-Chr5:2770840 Cre09g2174 Cre-Chr9:40811400 3.40E-69 dispersed
Cre06g0808 Cre-Chr6:1427099 Cre09g2174 Cre-Chr9:40811400 1.10E-73 dispersed
Cre06g1437 Cre-Chr6:8708872 Cre09g2174 Cre-Chr9:40811400 4.80E-57 dispersed
Cre06g2308 Cre-Chr6:31037335 Cre09g2174 Cre-Chr9:40811400 8.30E-63 dispersed
Cre07g0703 Cre-Chr7:4944381 Cre09g2174 Cre-Chr9:40811400 4.80E-58 dispersed
Cre07g0929 Cre-Chr7:8991845 Cre09g2174 Cre-Chr9:40811400 3.40E-17 dispersed
Cre08g1113 Cre-Chr8:24321814 Cre09g2174 Cre-Chr9:40811400 4.60E-45 dispersed
Cre09g1156 Cre-Chr9:12775472 Cre09g2174 Cre-Chr9:40811400 3.50E-66 dispersed
Cre09g2174 Cre-Chr9:40811400 Cre10g0428 Cre-Chr10:3159720 5.30E-63 dispersed
Cre09g2170 Cre-Chr9:40734516 Cre09g2174 Cre-Chr9:40811400 1.50E-18 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g2174 - - - 0.0