Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g2175 ATGGCCGCTTCTGGGGGCACTAGTTATAGAAATGGCGCCACTTCCAGAAATTCACTTAAGCTCGATAAGCCCTTTTCTGCTAATTCCAACCCCAAATCTTCTCTCAAGTCAAAGTCTCTTCCTAATTCTGCTCTTCGCCGCAGTAGCCCTGCATCTCTCGGAGCTGCCAAGGATGATGGTGCAGTTCCTGGAAGAGTTCGAGTGGCTGTTAGATTGCGACCACGCAATACAGAAGAATTGATAGCCGATGCTGATTTTGCTGATTGTGTAGAATTACAGCCAGAGCTGAAAAGGTTGAAACTTCGGAAGAACAACTGGGATTCAGATACTTATGAGTTTGATGAAGTGCTAACTGAGTTTGCATCTCAAAAACGTGTTTATGAAGTTGTGGCAAAACCTGTTGTGGAGAGTGTATTGGATGGCTACAATGGAACAATTATGGCATATGGACAGACTGGTACTGGTAAAACATATACTCTTGGAAGACTTGGAGAGGAAGACACCGCTGACCGTGGAATCATGGTGCGTGCTATGGAGGACATTTTGGCCGAAGTTTCTTTGGAAACGGATTCTGTCTCAGTATCCTACCTGCAGCTTTATATGGAGAGCATACAAGACCTTCTTGACCCTGCAAATGATAACATTTCCATTGTAGAAGATCCTAAAACTGGAGATGTATCAGTACCTGGAGCTAGCCTTGTAGAGATTAGACATCAGGAGAGCTTTGTGGAACTACTAAGATTGGGGGAAGCTCATCGGTTTGCTGCAAATACAAAACTGAATACTGAATCTTCTCGTAGTCATGCAATTCTCATGGTACACGTAAAGCGGTCTCTAAAAGGAAGGGATTCAACTCTATCAAGTGATATTGGTGGGAATTCTCATTTGGTTAAGACCTTGAAACCTCCAATCGTTCGTAAGGGAAAATTAGTGGTAGTGGATCTTGCTGGTTCTGAGCGTATTGACAAGTCAGGAAGTGAAGGACATACACTTGAAGAAGCCAAATCCATCAATCTCTCCCTGAGTGCATTAGGGAAGTGCATAAATGCACTTGCTGAGAATAGTGCACACGTTCCAGTTAGGGATTCAAAGCTGACGAGATTACTTCGGGATTCATTTGGAGGAACAGCAAGAACTTCACTGGTTATTACTATTGGTCCTTCACCTCGACATCGTGGAGAGACTACGAGTACAATATCCTTCGGCCAACGGGCTATGAAGGTGGAAAATATGCTGAAGATAAAAGAAGAATTTGATTATAAAAGTTTGTCAAGAAGGTTGGACATTCAATTAGACAAACTGATTGCTGAACATGAAAGGCAGCAAAAGGCGTTTGAGAATGAAATTGAAAGAATTACCAAAGAAGCACAGGATCGCATATCTGAGGCTGAAAGAAGTCATTCAAATGCCCTGGAGAAGGAAAGGCTGAAATATCAGAAGGATTACATGGAATCGATCAAGAAGCTTGAAGATCAACTGATGGTGAAGCAGAAGAAGCTTGGTGGGGAGAAAGTAATTAATGAAGAAGTTGCTGCTTCTGCTTCTAGTGTAATTGCTAATGGAGAGGGTTTGATAGTGTCTGCTGACAAGGAAGTGGCAGAGCTAAAGAAGTTGGTTAAAAAGGAAACGCTTTTGAGGAAAGCAGCTGAAGAGGAAGTTAACAATCTTAGAAGTCAAGTAGCCCAACTGAAGAGATCAGAGACATCATGCAATTCAGAGATCTCAAAGCTCCGCAAGACTCTAGAAGATGAACAAAATCAGAAAAAGAAACTAGAAGGAGATATAGCTATGCTACAAAGCCAGTTGTTGCAATTGAGCTTTGAAGCAGATGAGACCAGTAGGCGATTGGACAGAGGTGAGACTGGGAAAGTCCTCGGTTCTCTAGATTCTCTCGTGCAACAAGTTAAACAGTCACAGGCTCAGGACGCTGGAAACGGAGAGAAGGCTTCAGTGGCCAAACTCTTTGAGCAAGTGGGACTGCAAAAGATCTTGTCATTGCTGGAAGCTGAGGATTACGACGTCAGAATTCATGCTGTGAAAGTTGTTGCAAATCTTGCAGCTGAAGAAACAAATCAGCAAAAGATTGTTGAGGCTGGGGGCCTTTCTTCTTTGCTGATGCTACTCAGAAGCACTGAGGATGAGACAATACACAGAGTTGCTGCAGGTGCAATTGCAAATCTGGCAATGAATGAGACCAACCAAGAGCTCATTATGTCCCACGGAGGCATTAGCTTACTCTCCACGACCGCTGCCAATGCTGAGGATCCCCAAACTCTTCGTATGGTTGCTGGAGCAATCGCCAATTTGTGTGGCAATGATAAGTTGCAGACAAAGCTAAGGGGCGAAGGCGGTATTAAGGCATTGCTTGGTATGGTAAGATGCAAACATCCTGATGTTCTTGCACAAGTTGCTAGAGGAATTGCAAATTTTGCAAAGTGCGAGTCGAGGGCCTCTACACAAGGGACCAAGGCTGGAAAGTCTTTCTTAATTGAAGATGGAGCACTCCCATGGATTGTACAGAATGCCAACAATGAAGCATCAACGATAAAACGACATATCGAACTTGCACTCTGTCATTTAGCACAACATGAAGTGAATGCAAAAGACATGATCAGTGGAGGTGCCCTGTGGGAACTAGTTCGGATATCGCGGGACTGTTCACGGGAAGACATAAGGACTCTTGCACATCGAACATTAATATCAAGTCCAACATTTCAAGCGGAAATGAGACGATTACGAATAGATTATTGA 2751 43.51 MAASGGTSYRNGATSRNSLKLDKPFSANSNPKSSLKSKSLPNSALRRSSPASLGAAKDDGAVPGRVRVAVRLRPRNTEELIADADFADCVELQPELKRLKLRKNNWDSDTYEFDEVLTEFASQKRVYEVVAKPVVESVLDGYNGTIMAYGQTGTGKTYTLGRLGEEDTADRGIMVRAMEDILAEVSLETDSVSVSYLQLYMESIQDLLDPANDNISIVEDPKTGDVSVPGASLVEIRHQESFVELLRLGEAHRFAANTKLNTESSRSHAILMVHVKRSLKGRDSTLSSDIGGNSHLVKTLKPPIVRKGKLVVVDLAGSERIDKSGSEGHTLEEAKSINLSLSALGKCINALAENSAHVPVRDSKLTRLLRDSFGGTARTSLVITIGPSPRHRGETTSTISFGQRAMKVENMLKIKEEFDYKSLSRRLDIQLDKLIAEHERQQKAFENEIERITKEAQDRISEAERSHSNALEKERLKYQKDYMESIKKLEDQLMVKQKKLGGEKVINEEVAASASSVIANGEGLIVSADKEVAELKKLVKKETLLRKAAEEEVNNLRSQVAQLKRSETSCNSEISKLRKTLEDEQNQKKKLEGDIAMLQSQLLQLSFEADETSRRLDRGETGKVLGSLDSLVQQVKQSQAQDAGNGEKASVAKLFEQVGLQKILSLLEAEDYDVRIHAVKVVANLAAEETNQQKIVEAGGLSSLLMLLRSTEDETIHRVAAGAIANLAMNETNQELIMSHGGISLLSTTAANAEDPQTLRMVAGAIANLCGNDKLQTKLRGEGGIKALLGMVRCKHPDVLAQVARGIANFAKCESRASTQGTKAGKSFLIEDGALPWIVQNANNEASTIKRHIELALCHLAQHEVNAKDMISGGALWELVRISRDCSREDIRTLAHRTLISSPTFQAEMRRLRIDY 916
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 40815940 40824390 - CrPI670011_09g021750.1 Cre09g2175 508843

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g2175 916 PANTHER KINESIN-LIKE PROTEIN KIF11 64 883 IPR047149 GO:0005876(PANTHER)|GO:0008574(PANTHER)|GO:0051231(PANTHER)|GO:0072686(PANTHER)|GO:0090307(PANTHER)
Cre09g2175 916 MobiDBLite consensus disorder prediction 1 58 - -
Cre09g2175 916 Gene3D - 524 901 IPR011989 -
Cre09g2175 916 Coils Coil 431 473 - -
Cre09g2175 916 ProSitePatterns Kinesin motor domain signature. 308 319 IPR019821 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)
Cre09g2175 916 PRINTS Kinesin heavy chain signature 141 162 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cre09g2175 916 PRINTS Kinesin heavy chain signature 309 327 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cre09g2175 916 PRINTS Kinesin heavy chain signature 358 379 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cre09g2175 916 SMART kinesin_4 63 416 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cre09g2175 916 Pfam Armadillo/beta-catenin-like repeat 691 728 IPR000225 GO:0005515(InterPro)
Cre09g2175 916 SUPERFAMILY ARM repeat 649 899 IPR016024 -
Cre09g2175 916 FunFam Kinesin-like protein 628 904 - -
Cre09g2175 916 Gene3D Kinesin motor domain 57 438 IPR036961 -
Cre09g2175 916 SMART arm_5 688 729 IPR000225 GO:0005515(InterPro)
Cre09g2175 916 SMART arm_5 772 812 IPR000225 GO:0005515(InterPro)
Cre09g2175 916 SMART arm_5 648 687 IPR000225 GO:0005515(InterPro)
Cre09g2175 916 SMART arm_5 730 771 IPR000225 GO:0005515(InterPro)
Cre09g2175 916 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 699 742 IPR000225 GO:0005515(InterPro)
Cre09g2175 916 MobiDBLite consensus disorder prediction 1 49 - -
Cre09g2175 916 CDD KISc 65 406 - -
Cre09g2175 916 Coils Coil 479 499 - -
Cre09g2175 916 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 65 444 IPR027417 -
Cre09g2175 916 Coils Coil 574 601 - -
Cre09g2175 916 Coils Coil 532 566 - -
Cre09g2175 916 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 658 700 IPR000225 GO:0005515(InterPro)
Cre09g2175 916 FunFam Kinesin-like protein 57 438 - -
Cre09g2175 916 Pfam Kinesin motor domain 71 408 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cre09g2175 916 ProSiteProfiles Kinesin motor domain profile. 65 408 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g2175 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g0724 Cre-Chr8:20280919 Cre09g2175 Cre-Chr9:40815940 3.50E-194 dispersed
Cre09g2175 Cre-Chr9:40815940 Cre10g1998 Cre-Chr10:34659250 7.80E-49 dispersed
Cre05g0298 Cre-Chr5:2756797 Cre09g2175 Cre-Chr9:40815940 3.80E-298 wgd
Cre08g1613 Cre-Chr8:28592391 Cre09g2175 Cre-Chr9:40815940 1.30E-53 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g462 . . Bda06g00057 . . . Bma07g01621 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00360 . . . . . Bda09g00070 . . . . . . . . . . . . Cpe13g00198 Bhi12g00357 . . . . . Lcy12g1744 Cla01g00338 Cam01g0351 Cec01g0347 Cco01g0359 Clacu01g0355 Cmu01g0335 Cre09g2175 Lsi09g00364 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001054 3 5 3 2 3 2 5 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 2 2 2 2 5 2 3 80