Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g2187 ATGACGCACTTTCTTCAAACCTCCATTTCTCTCGGTTCGTTGCGCGAAAGGTTTCAATTTTCATCTTCTTCCTCTTTCCTTCACTCTAATTCCGTTGAATTAAAATCCTTCTCGTGCAAAATGTCGCCCGATTCTCCAATACCAAGTCAATCCATCACCATCCCCTGCCAACTCGACCAACCTGTTGAGATTCTCGCTGCACCCGGTGTCTCTTATTCCGATTTCCGGAATGCCATCGATTCATCGTTGTTCAAACAATGGCTGATGAACTTGCAAAGCGAGAGGGGGATTTTAGCCAATGGAGCCATGTCTCTGAAGCGCGTTCTTATTCAGGGAGTCGATATGTTCGGAAGCAGAATCGGGTTTCTCAAATTTAAAGCCGACATCTACGATAAGCAAACCGGGAAGAAGGTTCCAGGTATTGTCTTTGCAAGAGGACCTGCTGTTGCTGTGCTTATCCTTTTGAGTTGCGAAGGAGAAACTTATGCTGTCCTGACCGAGCAGGTTAGAGTTCCTGTTGGGAAGCATATGTTGGAATTGCCTGCTGGTATGTTGGATGATGATGAGGGGGATTTTGTTGGCACTGCAGTTCGTGAGGTTGAAGAAGAAATTGGCATTCAATTAAAGGTTGAGGACATGGTTGATCTTACTGGCTTCTTGGACCCATCGACTGGATGCAGAGTCTTTCTTTCTGCTGGAGGATGTGATGAGGGAATCGGTCTCTTCTTGTATCGAGGATCTGCAAGTAAAGAGACAATTGCAGAGCTGCAAGGAAAGGAAACTGGACTCAGGGATCATGGCGAGCTGATTAAGGTTCATGTTGTTCCCTACAAAAAACTCTGGCGCGTTACAGCTGATTCGATGACTCTCATGGCCATGGCACTGTATGAAATGGCTCAGAAGGAAGGGCTTTTGCCTTCTTTGAAACCATGCTAG 936 46.15 MTHFLQTSISLGSLRERFQFSSSSSFLHSNSVELKSFSCKMSPDSPIPSQSITIPCQLDQPVEILAAPGVSYSDFRNAIDSSLFKQWLMNLQSERGILANGAMSLKRVLIQGVDMFGSRIGFLKFKADIYDKQTGKKVPGIVFARGPAVAVLILLSCEGETYAVLTEQVRVPVGKHMLELPAGMLDDDEGDFVGTAVREVEEEIGIQLKVEDMVDLTGFLDPSTGCRVFLSAGGCDEGIGLFLYRGSASKETIAELQGKETGLRDHGELIKVHVVPYKKLWRVTADSMTLMAMALYEMAQKEGLLPSLKPC 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 40914817 40917437 + CrPI670011_09g021870.1 Cre09g2187 508855

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g2187 311 ProSiteProfiles Nudix hydrolase domain profile. 144 299 IPR000086 -
Cre09g2187 311 CDD ADPRase_NUDT5 145 298 - -
Cre09g2187 311 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 116 302 - -
Cre09g2187 311 SUPERFAMILY Nudix 122 296 IPR015797 -
Cre09g2187 311 PANTHER UDP/ADP-SUGAR PYROPHOSPHATASE 99 306 - GO:0006753(PANTHER)|GO:0019693(PANTHER)|GO:0080041(PANTHER)|GO:0080042(PANTHER)
Cre09g2187 311 FunFam Nudix hydrolase 14 chloroplastic 115 302 - -
Cre09g2187 311 Pfam NUDIX domain 146 280 IPR000086 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g2187 K18447 - - csv:101208090 507.679
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre09g2187 Cre-Chr9:40914817 Cre09g2188 Cre-Chr9:40920537 4.00E-138 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g439 . . . . . . . . . . . Cma15g01181 . . . . . . . . . . . . . . . . . . . Cone8ag0345 Cone12ag0339 . . . . . . . Blo19g00291 . . Bpe08g01456 . . . . . Cmo15g01243 . . . . . Cpe13g00192 . . . . . . . Cla01g00327 Cam01g0339 Cec01g0333 Cco01g0346 Clacu01g0343 Cmu01g0323 Cre09g2187 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006179 1 1 1 0 1 2 1 2 2 1 1 2 1 1 1 1 2 2 1 2 1 3 1 1 1 1 1 1 1 1 38