Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g2197 ATGGAAGATCAAGCCCTTCCTCAGCGGACCCATCAATCTTCTTCCACGCCTTCTCCTTCTTCTTCTTCTTCTTCCTCTTCTTCTTCTTCTTCTTCTTTACACCTCAATTTGCCGCCTTCAATGTCTCGGCCTTCTCACTCACTTGAAACCCTAACCCCATCTCGCCAAATCGACCGTATGATCAATATCAACCATCATTTGTCCCCATCTAGAGCTATCTACTCTGATAGATTCATACCCAGTAGATCTGGTTCCAATTTTGCCCTATTTGATATCTCCCCTGTTTCCAATTCCCACTCTGATGGTCGTGAGGATACTTCTACTGCTTACGCTACGCTTCTTCGGACAGCTTTGTTTGGTCCTGATGCTGGAGTAATCCCTCCTGCTACACCTGAGAAGAGAAGCTCCCCAATGTGCCTTCCTAATCATAATATTTTTCGTTATAAGACCGAGACTAGGAGGTCAATGCATTCGCTTTCGCCTTTTGGGTTTGATGATGCCACTCCTGGGCTTAATCCTAGTCCTGTTAAGACTCCAAGGAAGGTTCCTCGATCGCCTTATAAGGTCTTGGATGCACCTGCTCTACAAGATGATTTTTATCTCAATCTTGTGGATTGGTCTTCGCATAATGTGCTGGCTGTGGGGTTGGGTAATTGTGTTTATCTCTGGAATGCTTGTAGTAGTAAGGTCACCAAGTTATGTGATTTGGGAATTGATGATAGTGTATGTTCAGTGGGGTGGGCACAGCGTGGAACTCATCTTGCTGTTGGCACTAGCAATGGGAAAGTCCAGATTTGGGATGCATCACGCTGTAAAAGGGTTAGGACCATGGAGGGCCATCGTTTACGAGTTGGGGCCTTAGCTTGGAGCTCATCTCTTTTATCGTCTGGTAGCCGGGACAAAAGTATTCTTCAAAGAGATATTCGGGCGCAGGATGATTTTGTGACTAAATTATCTGGCCATAAATCAGAGGTTTGTGGATTGAAATGGTCATATGATAATCGTGAATTGGCATCAGGAGGAAATGATAATAGATTATTTGTTTGGAATCAACATTCAACCCAACCAGTACTTAAATTTTATGAGCACACCGCTGCTGTAAAAGCTATTGCATGGTCGCCTCATCTTCATGGACTACTCGCATCAGGGGGTGGAACTGCAGATAGATGTATTCGTTTTTGGAACACAACGACCAATACACATTTGAGCTGCATGGACACTGGAAGTCAGGTGTGCAATCTGGCATGGTCCAAGAATGTTAATGAACTTGTTAGTACCCATGGGTTCTCCCAAAACCAAATTATAGTCTGGAGATATCCAACTATGTCCAAGTTGGCAACATTGACTGGCCATACTTTCAGAGTTCTGTATCTGGCCATATCTCCTGATGGACAGACCATTGTAACAGGTGCTGGTGATGAAACGCTAAGATTTTGGAATGTCTTCCCTTCACCTAAATCGCAGAACACGGACAGTGAAATCGGAGCATCCTTCCTGGGACGAACCACCATCCGTTAA 1518 44.6 MEDQALPQRTHQSSSTPSPSSSSSSSSSSSSSLHLNLPPSMSRPSHSLETLTPSRQIDRMININHHLSPSRAIYSDRFIPSRSGSNFALFDISPVSNSHSDGREDTSTAYATLLRTALFGPDAGVIPPATPEKRSSPMCLPNHNIFRYKTETRRSMHSLSPFGFDDATPGLNPSPVKTPRKVPRSPYKVLDAPALQDDFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWAQRGTHLAVGTSNGKVQIWDASRCKRVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQDDFVTKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKFYEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLAWSKNVNELVSTHGFSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKSQNTDSEIGASFLGRTTIR 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 41069640 41072994 + CrPI670011_09g021970.1 Cre09g2197 508865

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g2197 505 MobiDBLite consensus disorder prediction 7 48 - -
Cre09g2197 505 FunFam FIZZY-related 2 isoform 1 183 483 - -
Cre09g2197 505 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 318 350 - -
Cre09g2197 505 Pfam WD domain, G-beta repeat 315 350 IPR001680 GO:0005515(InterPro)
Cre09g2197 505 Pfam WD domain, G-beta repeat 444 480 IPR001680 GO:0005515(InterPro)
Cre09g2197 505 Pfam WD domain, G-beta repeat 355 395 IPR001680 GO:0005515(InterPro)
Cre09g2197 505 MobiDBLite consensus disorder prediction 1 48 - -
Cre09g2197 505 Pfam Anaphase-promoting complex subunit 4 WD40 domain 237 291 IPR024977 -
Cre09g2197 505 ProSiteProfiles Trp-Asp (WD) repeats profile. 318 359 IPR001680 GO:0005515(InterPro)
Cre09g2197 505 Gene3D - 176 485 IPR015943 GO:0005515(InterPro)
Cre09g2197 505 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 39 491 IPR033010 GO:0005680(PANTHER)|GO:0010997(PANTHER)|GO:0010997(InterPro)|GO:0031145(PANTHER)|GO:0097027(InterPro)|GO:1904668(InterPro)|GO:1905786(PANTHER)|GO:1990757(PANTHER)
Cre09g2197 505 SUPERFAMILY WD40 repeat-like 193 481 IPR036322 GO:0005515(InterPro)
Cre09g2197 505 ProSiteProfiles Trp-Asp (WD) repeats profile. 448 481 IPR001680 GO:0005515(InterPro)
Cre09g2197 505 ProSiteProfiles Trp-Asp (WD) repeats profile. 235 276 IPR001680 GO:0005515(InterPro)
Cre09g2197 505 SMART WD40_4 227 267 IPR001680 GO:0005515(InterPro)
Cre09g2197 505 SMART WD40_4 311 350 IPR001680 GO:0005515(InterPro)
Cre09g2197 505 SMART WD40_4 353 395 IPR001680 GO:0005515(InterPro)
Cre09g2197 505 SMART WD40_4 183 224 IPR001680 GO:0005515(InterPro)
Cre09g2197 505 SMART WD40_4 441 480 IPR001680 GO:0005515(InterPro)
Cre09g2197 505 SMART WD40_4 270 307 IPR001680 GO:0005515(InterPro)
Cre09g2197 505 SMART WD40_4 397 438 IPR001680 GO:0005515(InterPro)
Cre09g2197 505 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 448 481 - -
Cre09g2197 505 ProSitePatterns Trp-Asp (WD) repeats signature. 467 481 IPR019775 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g2197 K03364 - - csv:101220762 974.926
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre09g2197 Cre-Chr9:41069640 Cre09g2400 Cre-Chr9:43382204 1.30E-98 dispersed
Cre09g2197 Cre-Chr9:41069640 Cre01g0499 Cre-Chr1:4289071 5.20E-164 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g425 . . . . . . . Bma14g00575 . . Cma02g01496 Cma15g01185 Car02g01258 Car15g01073 . . Cpe05g00294 . . . . . . . . . . . . . . . . Cone6ag0735 Cone9ag0739 . Csa05g00338 Chy09g01171 . Blo03g00379 . Bda07g00507 . . Bpe11g00694 . . . Cmo02g01537 Cmo15g01249 . . . . . Cpe13g00188 Bhi12g00333 . . Lac11g2159 Hepe06g1599 . Lcy12g1717 Cla01g00318 Cam01g0328 Cec01g0320 Cco01g0337 Clacu01g0330 Cmu01g0314 Cre09g2197 Lsi09g00323 . . Cme09g01704
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006983 1 1 1 1 1 1 4 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 37