Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g2199 ATGGTGAGAGGAAAAACACAAATGAAGCGGATAGAAAATGCTACAAGCAGGCAAGTTACCTTTTCAAAGCGCAGAAATGGCTTACTCAAGAAGGCTTTTGAGCTTTCAGTTCTTTGTGATGCTGAAGTTGCACTTATCATTTTCTCTCCAAGAGGCAAGCTTTACGAGTTTTCAAATTGCAGTATGAACAAGACAATTGATCGCTATCAGAACAGAACCAAAGATTTGATGTCAAGCAACAACACAGTTGAAGATGTGCAGTTGGAGAAGGAATATGACACCTTTAGCATGACTAAGAAGTTAGAGCACCTTGAAGTTTGTAAAAGAAAACTGTTGGGAGATGGCTTGGATTTGTGTTCCATTGATGAGTTGCAGCAGCTTGAAAGGCAACTTGAAAGAAGCTTAAGCAGAATTAGGTCAAGAAAGTATCAAATGCTGAAGGAAGAAATTATGAAGCTGAAGGAAGAGGAGAAAATGTTGCTGGAAGAAAATGCAGCACTGCAGATTAAGGTTAGTACTGAGTCATCAAGAAAACAAGAAAGCAATCAAAGATCAGAATCATCAAATCATCAAGAGATAATGGATGTGGAAACTGAACTATTCATAGGACCACCAGAGAGAAGAAGCAACAATAATAATGGTTTCCTGTAG 651 38.4 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSNCSMNKTIDRYQNRTKDLMSSNNTVEDVQLEKEYDTFSMTKKLEHLEVCKRKLLGDGLDLCSIDELQQLERQLERSLSRIRSRKYQMLKEEIMKLKEEEKMLLEENAALQIKVSTESSRKQESNQRSESSNHQEIMDVETELFIGPPERRSNNNNGFL 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 41090544 41095619 - CrPI670011_09g021990.1 Cre09g2199 508867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g2199 216 MobiDBLite consensus disorder prediction 172 193 - -
Cre09g2199 216 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre09g2199 216 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre09g2199 216 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cre09g2199 216 MobiDBLite consensus disorder prediction 177 193 - -
Cre09g2199 216 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 187 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cre09g2199 216 Coils Coil 121 141 - -
Cre09g2199 216 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre09g2199 216 SUPERFAMILY SRF-like 3 74 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre09g2199 216 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre09g2199 216 Coils Coil 143 170 - -
Cre09g2199 216 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre09g2199 216 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre09g2199 216 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cre09g2199 216 FunFam Agamous-like MADS-box protein AGL13 13 79 - -
Cre09g2199 216 Pfam K-box region 89 171 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cre09g2199 216 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cre09g2199 216 Gene3D - 14 91 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre06g0799 Cre-Chr6:1345125 Cre09g2199 Cre-Chr9:41090544 1.20E-54 dispersed
Cre08g0046 Cre-Chr8:1162935 Cre09g2199 Cre-Chr9:41090544 3.30E-38 dispersed
Cre08g0990 Cre-Chr8:23015602 Cre09g2199 Cre-Chr9:41090544 2.70E-33 dispersed
Cre08g0991 Cre-Chr8:23029370 Cre09g2199 Cre-Chr9:41090544 2.20E-29 dispersed
Cre09g1993 Cre-Chr9:38924767 Cre09g2199 Cre-Chr9:41090544 7.10E-46 dispersed
Cre09g2199 Cre-Chr9:41090544 Cre10g1367 Cre-Chr10:27326804 2.70E-24 dispersed
Cre05g0953 Cre-Chr5:8784216 Cre09g2199 Cre-Chr9:41090544 6.60E-46 wgd
Cre05g0279 Cre-Chr5:2591421 Cre09g2199 Cre-Chr9:41090544 1.60E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54433 PF01486 K-box 5.40E-22 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g2199 - - - 0.0