Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g2201 ATGCAAGAACCTGGGTTGGGAATGATGACTGCTGCCGGTGGGTCCACTGGTGCCTTAAGCGGCGACGTTTCGGTTTCGGGTGACGGAGTTCATAACAGTCAACTGAAGGCGGAGATTGCTACTCATCCACTTTATGAGCAGCTTCTTTCAGCTCATGTTGCTTGTCTTCGTGTTGCTACTCCCATTGATCAGCTTCCGATGATCGACGCTCAGCTTTCTCAATCGCACCATGTTTTGCGTTCTTATGCTTCTTCTCAGCAGCATCACCCAAATGCTCATTCCTTAACGCCTCATGAGCGCCAAGAGCTTGACAATTTTCTGGCACAGTATATGATCGTTTTGTGCTCTTTCAAGGAGCAGCTTCAACAACATGTGAGAGTCCACGCAGTGGAAGCTGTTATGGCCTGCCGTGAAATTGAAAACACTCTACAAGCTCTTACAGGAGTGAGCCTTGGTGAAGGCACCGGTGCAACGATGTCGGATGACGAGGACGACATTCCAATGGACTTTTCGCTGGATCAATCCGGCACCGATGCACATGACATGATGGGGTTCGGACCACTGCTTCCAACCGAATCCGAAAGATCATTGATGGAGAGGGTCCGGCAAGAACTGAAGATTGAGCTGAAACAGGGTTTCAAGTCAAGAATTGAAGATGTGAGAGAGGAAATATTGAGAAAAAGAAGGGCTGGGAAGTTACCTGGGGATACAACTACAGTTTTGAAAAACTGGTGGCAGCAACATTCTAAGTGGCCTTACCCAACTGAAGACGATAAGGCGAAGCTGGTGGAGGAGACAGGGTTGCAGCTGAAACAAATAAACAATTGGTTCATCAACCAAAGGAAGAGAAACTGGCACAGCAACTCTCAGTCAGTGACATCCTTGAAGTCCAAGCGCAAGAGATAA 906 48.01 MQEPGLGMMTAAGGSTGALSGDVSVSGDGVHNSQLKAEIATHPLYEQLLSAHVACLRVATPIDQLPMIDAQLSQSHHVLRSYASSQQHHPNAHSLTPHERQELDNFLAQYMIVLCSFKEQLQQHVRVHAVEAVMACREIENTLQALTGVSLGEGTGATMSDDEDDIPMDFSLDQSGTDAHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTTVLKNWWQQHSKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKR 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 41135487 41138674 + CrPI670011_09g022010.1 Cre09g2201 508869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g2201 301 SMART KNOX2_2 93 148 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cre09g2201 301 SMART HOX_1 226 291 IPR001356 GO:0003677(InterPro)
Cre09g2201 301 Pfam KNOX2 domain 97 147 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cre09g2201 301 FunFam homeobox protein knotted-1-like 3 isoform X1 225 286 - -
Cre09g2201 301 ProSiteProfiles 'Homeobox' domain profile. 224 287 IPR001356 GO:0003677(InterPro)
Cre09g2201 301 SUPERFAMILY Homeodomain-like 226 291 IPR009057 -
Cre09g2201 301 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 35 287 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cre09g2201 301 SMART KNOX1_2 33 77 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Cre09g2201 301 CDD homeodomain 227 288 IPR001356 GO:0003677(InterPro)
Cre09g2201 301 Pfam Homeobox KN domain 244 283 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cre09g2201 301 Gene3D - 223 297 - -
Cre09g2201 301 ProSiteProfiles ELK domain profile. 204 224 IPR005539 GO:0003677(InterPro)
Cre09g2201 301 Pfam KNOX1 domain 35 76 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g1299 Cre-Chr8:26057183 Cre09g2201 Cre-Chr9:41135487 5.60E-104 dispersed
Cre08g1720 Cre-Chr8:29486087 Cre09g2201 Cre-Chr9:41135487 2.90E-20 dispersed
Cre09g2201 Cre-Chr9:41135487 Cre05g1822 Cre-Chr5:30367275 2.50E-105 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54434 PF03791 KNOX2 7.60E-18 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g2201 - - - 0.0