Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g2209 ATGGATTGGTTCGCTCAATTTTCTGACCCTCTTCCTTATTATGCTAATTGTAGTTACAAATCGGAATCCTCTTCCACGTTTTCAGACGCCGGAACACCTCCTCATACGGTCGCTAACTCCGACGAAGAAGTGATTCTGGCGTCCAACCGCCCAAAGCGGCGGGCCGGTCGTCGGGTTTTTAAAGAAACCAGACATCCGGTTTACAGAGGAGTACGACGGAGGAATAACGACAAATGGGTTTGTGAGGTGAGGGAGCCAAATAAGAAGACCAGGATTTGGCTCGGGACTTACCCAACGGTGGAGATGGCGGCGCGTGCGCACGATGTAGCGGCACTCGCGTTGAGAGGGAAATCGGCTTGTCTCAATTTCGCTGACTCTGCTTGGCGGTTCCCGATTCCGGCGACTGATGACCCGTCTGTAATCAGGGAGGCGGCGGCGAGGGCGGCGAATGAGTGTAAGGATGAGGAATGTAATGTGGGTCGGGAAGAGGACGACGGCGTTTCGGGTCAGGCGACGGCGGATCCTGACCGACCGGATTATATCGACGATGAGGCTTTGTCGAATATGCCGATGTTGCTTGCCAGCATGGCGGAAGGACTTCTTCTTTCTCCTCCATCTTTTTGTGTCAATGATGACGTGGAGTGGGATGATGTGGCAATGAATGATGATGTGTCATTGTGGAGCTTTTAG 690 52.9 MDWFAQFSDPLPYYANCSYKSESSSTFSDAGTPPHTVANSDEEVILASNRPKRRAGRRVFKETRHPVYRGVRRRNNDKWVCEVREPNKKTRIWLGTYPTVEMAARAHDVAALALRGKSACLNFADSAWRFPIPATDDPSVIREAAARAANECKDEECNVGREEDDGVSGQATADPDRPDYIDDEALSNMPMLLASMAEGLLLSPPSFCVNDDVEWDDVAMNDDVSLWSF 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 41243439 41244128 - CrPI670011_09g022090.1 Cre09g2209 508877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g2209 229 ProSiteProfiles AP2/ERF domain profile. 67 124 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre09g2209 229 Gene3D AP2/ERF domain 67 125 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre09g2209 229 PRINTS Ethylene responsive element binding protein signature 90 106 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre09g2209 229 PRINTS Ethylene responsive element binding protein signature 68 79 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre09g2209 229 SMART rav1_2 67 130 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre09g2209 229 SUPERFAMILY DNA-binding domain 67 126 IPR016177 GO:0003677(InterPro)
Cre09g2209 229 Pfam AP2 domain 66 116 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre09g2209 229 FunFam Ethylene-responsive transcription factor 2 66 125 - -
Cre09g2209 229 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 23 229 IPR045277 GO:0003700(InterPro)
Cre09g2209 229 MobiDBLite consensus disorder prediction 159 179 - -
Cre09g2209 229 CDD AP2 68 126 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre09g1965 Cre-Chr9:38577931 Cre09g2209 Cre-Chr9:41243439 6.80E-54 dispersed
Cre09g2209 Cre-Chr9:41243439 Cre10g2040 Cre-Chr10:35113019 6.90E-31 dispersed
Cre09g2209 Cre-Chr9:41243439 Cre09g2210 Cre-Chr9:41270596 1.70E-29 tandem
Cre05g0963 Cre-Chr5:8865376 Cre09g2209 Cre-Chr9:41243439 2.70E-53 wgd
Cre08g1555 Cre-Chr8:28203138 Cre09g2209 Cre-Chr9:41243439 4.50E-14 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54435 PF00847 AP2 8.60E-15 CL0081 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g2209 - - - 0.0