Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre09g2209 | ATGGATTGGTTCGCTCAATTTTCTGACCCTCTTCCTTATTATGCTAATTGTAGTTACAAATCGGAATCCTCTTCCACGTTTTCAGACGCCGGAACACCTCCTCATACGGTCGCTAACTCCGACGAAGAAGTGATTCTGGCGTCCAACCGCCCAAAGCGGCGGGCCGGTCGTCGGGTTTTTAAAGAAACCAGACATCCGGTTTACAGAGGAGTACGACGGAGGAATAACGACAAATGGGTTTGTGAGGTGAGGGAGCCAAATAAGAAGACCAGGATTTGGCTCGGGACTTACCCAACGGTGGAGATGGCGGCGCGTGCGCACGATGTAGCGGCACTCGCGTTGAGAGGGAAATCGGCTTGTCTCAATTTCGCTGACTCTGCTTGGCGGTTCCCGATTCCGGCGACTGATGACCCGTCTGTAATCAGGGAGGCGGCGGCGAGGGCGGCGAATGAGTGTAAGGATGAGGAATGTAATGTGGGTCGGGAAGAGGACGACGGCGTTTCGGGTCAGGCGACGGCGGATCCTGACCGACCGGATTATATCGACGATGAGGCTTTGTCGAATATGCCGATGTTGCTTGCCAGCATGGCGGAAGGACTTCTTCTTTCTCCTCCATCTTTTTGTGTCAATGATGACGTGGAGTGGGATGATGTGGCAATGAATGATGATGTGTCATTGTGGAGCTTTTAG | 690 | 52.9 | MDWFAQFSDPLPYYANCSYKSESSSTFSDAGTPPHTVANSDEEVILASNRPKRRAGRRVFKETRHPVYRGVRRRNNDKWVCEVREPNKKTRIWLGTYPTVEMAARAHDVAALALRGKSACLNFADSAWRFPIPATDDPSVIREAAARAANECKDEECNVGREEDDGVSGQATADPDRPDYIDDEALSNMPMLLASMAEGLLLSPPSFCVNDDVEWDDVAMNDDVSLWSF | 229 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 41243439 | 41244128 | - | CrPI670011_09g022090.1 | Cre09g2209 | 508877 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre09g2209 | 229 | ProSiteProfiles | AP2/ERF domain profile. | 67 | 124 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre09g2209 | 229 | Gene3D | AP2/ERF domain | 67 | 125 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre09g2209 | 229 | PRINTS | Ethylene responsive element binding protein signature | 90 | 106 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre09g2209 | 229 | PRINTS | Ethylene responsive element binding protein signature | 68 | 79 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre09g2209 | 229 | SMART | rav1_2 | 67 | 130 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre09g2209 | 229 | SUPERFAMILY | DNA-binding domain | 67 | 126 | IPR016177 | GO:0003677(InterPro) | |
Cre09g2209 | 229 | Pfam | AP2 domain | 66 | 116 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cre09g2209 | 229 | FunFam | Ethylene-responsive transcription factor 2 | 66 | 125 | - | - | |
Cre09g2209 | 229 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D | 23 | 229 | IPR045277 | GO:0003700(InterPro) | |
Cre09g2209 | 229 | MobiDBLite | consensus disorder prediction | 159 | 179 | - | - | |
Cre09g2209 | 229 | CDD | AP2 | 68 | 126 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre09g1965 | Cre-Chr9:38577931 | Cre09g2209 | Cre-Chr9:41243439 | 6.80E-54 | dispersed | |
Cre09g2209 | Cre-Chr9:41243439 | Cre10g2040 | Cre-Chr10:35113019 | 6.90E-31 | dispersed | |
Cre09g2209 | Cre-Chr9:41243439 | Cre09g2210 | Cre-Chr9:41270596 | 1.70E-29 | tandem | |
Cre05g0963 | Cre-Chr5:8865376 | Cre09g2209 | Cre-Chr9:41243439 | 2.70E-53 | wgd | |
Cre08g1555 | Cre-Chr8:28203138 | Cre09g2209 | Cre-Chr9:41243439 | 4.50E-14 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
54435 | PF00847 | AP2 | 8.60E-15 | CL0081 | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre09g2209 | - | - | - | 0.0 |