Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre09g2210 ATGGCTGACCAAAAGCTTCAAATTAATGAAAGCCAAATAGACCAATCTCTTCATCCTCCTCCTCCAATATCTAAACCAATTGTCATTGACCCTTTTGTTTCTTCTGTCCCCACATCCCAAAATCCAAATCCTAAGTCACAAGAGGGTGAAGGTGAACAAAAACAACCTAATTTGCCTCAACAACTCCCACCACTACCTCCTTCATCTTCCATGGCTTCTTCTTCTTCAACTAAGAAGCATTCTTTGTATAGAGGAATCCGCTGCCGGAGCGGCAAATGGGTGTCCGAGATACGCGAGCCACGTAAGACAACACGCATATGGCTCGGCACGTTTCCGACTGCAGAGATGGCTGCTGCCGCTTATGATGTTGCTGCCCTTGCCCTCAAAGGCGGCGATGCGGTTCTTAACTTCCCTTCCTCCATTCCCACCTACCCTGTTCCCGCGTCGACTTCTCCGGTCGATATTCGCACAGCTGCCTCCACTGCCGCTGCTGCTACCGCCGCTAATGCGTTGAAGAAAGCTGCGTCGTCGACTTCCCCGGTTGACGTTTGCACTAAGGAAGATAGTAGCAATACGACGATGGGAATGGAGGAGTTTGTGGATGAAGAAGAAATTTTTGGGATGCCGGGTTTGTTGGCGGACATGGCGGAGGGGATGATGGTGTCCCCGCCGAGAATAAACTCGCCACCACTGTCCGATGACTCGATGGAAAATTCTGATGGAACGGAAAGTTTATGGAGCTACTTTTGA 750 49.87 MADQKLQINESQIDQSLHPPPPISKPIVIDPFVSSVPTSQNPNPKSQEGEGEQKQPNLPQQLPPLPPSSSMASSSSTKKHSLYRGIRCRSGKWVSEIREPRKTTRIWLGTFPTAEMAAAAYDVAALALKGGDAVLNFPSSIPTYPVPASTSPVDIRTAASTAAAATAANALKKAASSTSPVDVCTKEDSSNTTMGMEEFVDEEEIFGMPGLLADMAEGMMVSPPRINSPPLSDDSMENSDGTESLWSYF 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 41270596 41271345 - CrPI670011_09g022100.1 Cre09g2210 508878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre09g2210 249 Pfam AP2 domain 82 130 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre09g2210 249 SUPERFAMILY DNA-binding domain 81 140 IPR016177 GO:0003677(InterPro)
Cre09g2210 249 MobiDBLite consensus disorder prediction 228 249 - -
Cre09g2210 249 ProSiteProfiles AP2/ERF domain profile. 82 138 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre09g2210 249 FunFam Ethylene-responsive transcription factor 2 81 139 - -
Cre09g2210 249 MobiDBLite consensus disorder prediction 67 81 - -
Cre09g2210 249 MobiDBLite consensus disorder prediction 33 58 - -
Cre09g2210 249 SMART rav1_2 82 146 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre09g2210 249 Gene3D AP2/ERF domain 82 140 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre09g2210 249 CDD AP2 81 140 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cre09g2210 249 MobiDBLite consensus disorder prediction 224 249 - -
Cre09g2210 249 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 67 248 IPR045277 GO:0003700(InterPro)
Cre09g2210 249 MobiDBLite consensus disorder prediction 1 18 - -
Cre09g2210 249 MobiDBLite consensus disorder prediction 1 82 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre09g2210 Cre-Chr9:41270596 Cre10g0616 Cre-Chr10:5707220 3.10E-48 dispersed
Cre09g2209 Cre-Chr9:41243439 Cre09g2210 Cre-Chr9:41270596 1.70E-29 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54436 PF00847 AP2 2.40E-10 CL0081 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre09g2210 - - - 0.0